| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_44978 |
|---|
| Symbol | |
|---|
| ID | 4838480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 1382031 |
|---|
| End bp | 1383629 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640389795 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384222 |
|---|
| Protein GI | 150865131 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.800208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA ACAAATTCAC CATCCAAGAG CAGCTAAGTG GTTTCCCTGT ATTCCAGATG
GTTATCATAG GATTTCTCCG ACTAAGCGAG CCCATCGCCT TTACTTCGAT GTTCCCCTAC
ATCTACTTCA TGATCAAGCA TTTTGATATC GCAGAGGACG ATGCCCAAAT TTCTACTTAC
AGTGGATATT TAGCAGCTTC CTTCTCATTC AGCCAGTTTC TAAGCACAGT ACACTGGGCA
AAGGCTTCAA ACAAATATGG GAGGAAAACT ATACTATTGT GTGGTTGTGC TGGAACAGCA
TTTTCCATGA TAATCTTTGG TTTGAGCAAA AACTTTTACA TGGCTCTATT TGCTCGACTG
TTGATGGGAT TGCTCAATGG TAACGTCTCT ATCATGAGAA CAACAGTGGG AGAAATCGCT
CACGAAAATA GACATCAAGG TCTTGCTTTC AGTAACCTTT CCCTCCTTTG GAGTTTTGGT
AAATGTATAG GTGGATGGTT GGGAGGAGTG CTTACGAGTA CAAAAGTATC AAAGTCTTCT
ACTACAAAGC TACTGAGAGC AGATGAAGGG TTGTTTTCGC GTTACCCATT CCTCCTTTCA
AACGTGGTGG TTGCAGTATT GATATTGATA TTCATCGTTA TAGGCTGGCT TTTCTTGGAA
GAAACTCATG AGGAGAAAAA GTATTCCAGA GATATTGGAC TAGAAGTAGG AGATGCGCTT
AGACGTCTGT TGGGATTCCA AGTACCCGAA AGACCCTGGA AACTGAGAGG ACAATACTTT
GAAGTGGGAC AACCCCTATT GGATGAAGAG ATGGAAGACA ACTCGGTCAT AGAAATGCAC
AACTATCCCC ACAAGGGTAA ACTGAGTCGA GTAGACATCT CAGATGCTGA CGCCTCACAA
AGTGAAACTG ATACAGAAGC AGAACATGAG CTGATAATAC CATTGGCCGT AAGGAAGTGC
ATAATAAGCA ATTTTATGTG TTCCTTCCAG AATTTGATCT ACGTCGAGTT TTATCCAGTC
TTACTAGCTA AAGCACTTCG AGTAGAAGAT TTAAAATTCC CGTTTCATAT TAAAGGAGGG
TACGGCTTCA GTGCTGCAGA GATCGGAAAA CTTTTATCTA TAACAGGGTT AATTGGGGTA
GTTCTTGTTT CATTACTTTT TCCTGTAATT ACCAAATATT GCAGAACTGA TCTTGGGTTC
AGGATAGGAT TGTCCATAAA TCCCATTATC TACTTCTTTT TACCGTTATA TGTGTTCACA
CTGCACAAGT ACAATGAGGC AATGCCCAAA TATGTCACCG GGTTATTACT ATACTTGAAT
AGTAGCGTAG TTTCCTTCGC TAACGGGATT ACCTTCGCCC AAAATCTAAT TTTGATTCAC
AGGGCATCTC CAAAGAAGCA AAGAGCGTTA ATAAACAGCT ATGCCATGAC AGTCACCGCC
TTAGCTCGGT GTGCTGCCCC AATAATTTGG GGGTGGATTA TTTCTAAGTT TGATGCGCAG
GGTTATGGTG GGATGTCGTG GTGGGTTCTC TCAGTGTGGT CAATAATGAC ATTTTCACAT
TCGCTTTTCA TCCATGAGAC TGATGCGGAG GAGACCTAA
|
|---|
| Protein sequence | MTTNKFTIQE QLSGFPVFQM VIIGFLRLSE PIAFTSMFPY IYFMIKHFDI AEDDAQISTY
SGYLAASFSF SQFLSTVHWA KASNKYGRKT ILLCGCAGTA FSMIIFGLSK NFYMALFARS
LMGLLNGNVS IMRTTVGEIA HENRHQGLAF SNLSLLWSFG KCIGGWLGGV LTSTKVSKSS
TTKLSRADEG LFSRYPFLLS NVVVAVLILI FIVIGWLFLE ETHEEKKYSR DIGLEVGDAL
RRSLGFQVPE RPWKSRGQYF EVGQPLLDEE MEDNSVIEMH NYPHKGKSSR VDISDADASQ
SETDTEAEHE SIIPLAVRKC IISNFMCSFQ NLIYVEFYPV LLAKALRVED LKFPFHIKGG
YGFSAAEIGK LLSITGLIGV VLVSLLFPVI TKYCRTDLGF RIGLSINPII YFFLPLYVFT
SHKYNEAMPK YVTGLLLYLN SSVVSFANGI TFAQNLILIH RASPKKQRAL INSYAMTVTA
LARCAAPIIW GWIISKFDAQ GYGGMSWWVL SVWSIMTFSH SLFIHETDAE ET
|
|---|
| |