| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31820 |
|---|
| Symbol | MET1 |
|---|
| ID | 4838944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 1759339 |
|---|
| End bp | 1761063 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640390259 |
|---|
| Product | methionine metabolism |
|---|
| Protein accession | XP_001384647 |
|---|
| Protein GI | 126136246 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase
[TIGR01470] siroheme synthase, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.164559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACA TTCTAGCCTC CTTAAACTGT AGAGATGAAC ACCATCTCAT CATAGGAGTT
TCCAACGTTG CTACACTCCG GATAAATTCC ATCTTGGATG CAGGTGCCAT TCCTATACTT
TTCACTGAAT CTGGGGAAGT GTCTAAGGTA GAAGAGAGTG AAAAATTGAA GACAATAACC
GGAAAGTTCG AGTTTGACAC TATAAGGCAA TTACTTATAT CTGAGGGGAG AGCCGAAGTT
GACTTTATTG TCGATAGGGT ATTTGTGGCG TTACCGATGT CTCAAGCTAG ATTGAAGAAG
AGCATATATG ACTACTGTAA GAAGAACAGA ATACCGATCA ACACTTCTGA TTCGCCTGAT
CTCTCTACCT TCACGTTGTT GTCAACATTT ACTTCGGGAG ACTTCCAAAT GGGTGTTACC
ACTTCTGGCA AGGGGTGCAA ATTAGCATCG AGAATCAAGA GAGAGTTGAC CAATGCCCTT
CCAGCAAATA TAGGTGATAT TTGCGACAAG ATCGGCGACT TGAGAAAAAA GATACAAGAA
GAAGATAATC TCGAGCTTGA AGACTTGAAA AACAGCGATC ATTTCCATTC CATTGGAGAG
CACGACGAGG ATGCCATCAA TACAAGCAAG TTGAATGCTT TAGTGGAGGA ATTCAATATG
ACACAAGAAC AAAAAAAATT GCAAAGAACG AGATGGTTGA GCCAAGTCGT CGAATACTTC
CCGTTGAACA CGTTGGGGGA ACTATCGTTG GATGACTTGA CCTCAGCCTT CCATGAATAC
AAAGCTGGCG CTGCCGAAAC AGATGAGCCA GAAAAGAAGA AACAAAAAGT CGTAGATTCC
AAGAAGGGAA GCATATCCTT AGTGGGTTCT GGACCTGGGT CAGTTTCTCT TTTAACTATT
GGAGCACTTC AAGCTATTCA TAATGCCGAT CTCATCCTTG CAGACAAATT AGTTCCACAA
CAAGTGCTTG ACATCATTCC AAAGAAGAGA ACCAAATTGT TCATAGCCAG AAAGTTCCCT
GGGAATGCTG AAAGGGCTCA ACAAGAATTG TTATCTATGG GTTTGGAAGC GTTATTGCGT
GGACAAAAGG TGGTCAGATT GAAACAGGGT GATCCATATA TCTTTGGAAG AGGGGGAGAA
GAGTACAATT ACTTCTCTGA AAGAGGATTT ACTCCAGTAG TGTTACCGGG AATCACTTCT
GCCTTAGCAG CTCCTGTATT GACTAATATT CCAGCTACCC ACAGAGACGT AGCCGATCAG
GTTTTGATCT GTACAGGCAC CGGTCGTCGT GGAGCTCTTC CAAACTTGCC TGAATTTGTC
AAGTCCAGGA CAACAGTCTT TTTAATGGCA TTACATAGAG TGGTTGATTT GATTCCCAAA
TTGATAGAAA GAGACTGGGA CCCAAAATTG CCAGCAGCAA TTATAGAAAG AGCTTCGTGT
CCGGACCAGC GAATAGTAAG AACGACTATT GAGAATGTAG CCAAAGCTGT TGAAGCCTGT
GGATCCAGGC CCCCAGGATT GTTGGTTACC GGATATGCCT GTGATGTTAT CTTCAAGCAC
AATAGTGAAA CATCCGAACC ATGGGTGATA GAAGAAGGAT GTGAAACTGC CAACAGCACT
CATTTAGAGC CATTCTTGAA ACTTGTTTCC TCCTATAATC CAGAAGACAT CTCCAAACCC
AGCATTCATC AGACTCCCCC ACCTGAGCCA TTAGCTACTA GTTAA
|
|---|
| Protein sequence | MTNILASLNC RDEHHLIIGV SNVATLRINS ILDAGAIPIL FTESGEVSKV EESEKLKTIT
GKFEFDTIRQ LLISEGRAEV DFIVDRVFVA LPMSQARLKK SIYDYCKKNR IPINTSDSPD
LSTFTLLSTF TSGDFQMGVT TSGKGCKLAS RIKRELTNAL PANIGDICDK IGDLRKKIQE
EDNLELEDLK NSDHFHSIGE HDEDAINTSK LNALVEEFNM TQEQKKLQRT RWLSQVVEYF
PLNTLGELSL DDLTSAFHEY KAGAAETDEP EKKKQKVVDS KKGSISLVGS GPGSVSLLTI
GALQAIHNAD LILADKLVPQ QVLDIIPKKR TKLFIARKFP GNAERAQQEL LSMGLEALLR
GQKVVRLKQG DPYIFGRGGE EYNYFSERGF TPVVLPGITS ALAAPVLTNI PATHRDVADQ
VLICTGTGRR GALPNLPEFV KSRTTVFLMA LHRVVDLIPK LIERDWDPKL PAAIIERASC
PDQRIVRTTI ENVAKAVEAC GSRPPGLLVT GYACDVIFKH NSETSEPWVI EEGCETANST
HLEPFLKLVS SYNPEDISKP SIHQTPPPEP LATS
|
|---|
| |