Gene PICST_88185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_88185 
Symbol 
ID4838149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1332087 
End bp1332791 
Gene Length705 bp 
Protein Length155 aa 
Translation table12 
GC content40% 
IMG OID640389464 
Productpredicted protein 
Protein accessionXP_001383546 
Protein GI126134043 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2075] Ribosomal protein L24E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0390204 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.523172 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AGTTAATAAA AATGAAGGTT GAAGTTGACT CCTTTTCCGG TTCCAAGATC TACCCAGGTA 
GAGGTACCTT GTTCGTTAGA GGTGACTCTA AGGTTTTCAG ATTTCAATCC TCGAAGTCTG
CTTCCTTGTT CCACCAAAGA AAGAACCCAA GAAGAATCTC TTGGACTGTT TTGTACAGAA
GACAACACAA GAAGGGTATT TCTGAAGAAA CTTCTAAGAG AAGAAGCAGA AAGACCATCA
AGCACCAAAG AGCCATTGTC GGTGCTTCTT TAGAATTGAT CAAGGAAAGA AGAAACTTAA
AGGACTCTGA CAGAAAGGCT GCCAGAGACA ACAAGTTGGC CAAGGACAAG GAAGCCAAGA
AGGTTGCCAA GGCTGCCAGA AAGGCTGAAA AGGCCAAGTT GGCTGCTGCC GGCGGTAACA
TCGTCTCCAA GCAACAATCC AAGGGTGCTT TCCAAAAAGT TCACGCCACT TCCCGTTAAG
TAAATTAAAC GAATAATTTA TCTTCACTCC GTGTACATTT ATTAATTGGT TTGGTAGCTT
TTGTTATATA TCAATATAAA CTCTTCTAAG AATGCGATGT ATTAATGTAA CTACTCGGTA
TTATCATGAA CTGACAATGT CTGCTTCATG GGTCGCCCGT ACTACTAATA TCAATTGTAT
TGTACATGCT TTGGCAAACT GTATTGAGAA TACTACGAAA TAATT
 
Protein sequence
MKVEVDSFSG SKIYPGRGTL FVRGDSKVFR FQSSKSASLF HQRKNPRRIS WTVLYRRQHK 
KGISEETSKR RSRKTIKHQR AIVGASLELI KERRNLKDSD RKAARDNKLA KDKEAKKVAK
AARKAEKAKL AAAGGNIVSK QQSKGAFQKV HATSR