| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_82683 |
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| Symbol | VPS45 |
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| ID | 4837714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | - |
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| Start bp | 700830 |
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| End bp | 702674 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640389029 |
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| Product | vacuolar protein sorting associated protein |
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| Protein accession | XP_001383767 |
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| Protein GI | 150864793 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5158] Proteins involved in synaptic transmission and general secretion, Sec1 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.758582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTCA ATCTCGCTAA AGTGAGCAAT GTCTACTTCG AGAAGCTCTT TGCTGTTCAG
CGAAATGAAC TGAGCACAAA CTCGGAGATT AAAGCCAAAG TTTTGTTGGT AGACAAATTC
ACCACACCCA TAATCTCTAT GTGCTATACG CAATCGCAAT TGCTCCAGAA CGATATCATT
TTGATAGAGT TAATCGAAAA CCAAAGCACG CTCAATGTCA TGAAGCATCT AAATTGTATC
GTCTATATAA AACCGACACG AGAATCGATC CAGAGTTTGA TCAAGGAATT GAACAATCCT
CATTTCAGCA AGTATCAGTT GTTCTTGAAC AATACCATTA GCAAAGGAGA GCTTGAACGT
TTGGCTGAAG CAGATGAATT TGAAGTCATC AATCAGGTGA CTGAGATTTT CCAAGACTAC
CTAATTTTGA ACGACAACTT GTTCACGATC AACGTCAGCG AGCCCATAGC CAATGCCATT
AATCCAGTCG TAGAAGAATC TAATAGTCTT GTCAGTTTGT TACTTTCCTT GAAGAAATGT
CCCATTATTA AATATGAGTC CAATTCCTTG GAACTTAAAC GTTTGAGCTC AGAAATCTTG
TATAATATCA ATTCCAATTC CAACAACAAC CTCTTTGACG ACTTGAATCG CAAGTCGGAT
AGACCCCCCT TATTGCTTTT ACTAGACCGT AAGAATGATC CCATTACGCC ATTGATAACG
CCATGGACGT ACCAGTCTAT GATCCACGAA TTCTTAGGCA TCAAAAAGAA TATTGTAGCC
TTGACAGAGT CGAAGGAGCA GGTGACTTTG AACGAGTCGC AGGATAAGTT CTACAGGGAG
TCCATGTACT TAAACTACGG AGACTTGACT GAAAAATTCC AAAAATACGT AGAAGAGTAT
AAAAAAGAAA CTAAACAGTC GTCTCTTGAA AACCTCAAGA CGCAGAATTT ATCAGAGTTG
AAAAAGATGT TAACCAAATT CCCTGAGTTC AAGAAGTTGT CCAACAATAT CCTTAAACAT
TTAAACTTGA TTAGTGAAAT CGACAAGGAA ATCTCTATAC AAAACTTATG GGAGATTGGT
GAATTACAGC AGACCATTAT TTGTGAACTT GACACCCACC AAGCTATCAG GCAGAAGTTG
ACGGAAATCT TGGACAATCC AAAGGTGTCT ACGACTAACA AAATCAAATT GGTATTGTTG
TATTCGATCA GATTTCACAA CACAAGCGAA TTGCAAAACT TCATTGGCAA ATTGAACAAT
CCGTTGGTCA CTGATCCTTT GCCCACGTTA TCGCAAATTG CGTTATTAAA AAAGTTCAAG
ACTCTTTTCA ATTCCAACTT CACCACTTCA ACTAGCGGCC AGAATAATAG CAACAATCTT
GGAAATATCT TCCAAAACAA GAAGATCAAT ATCAACAGCT TTTTCAACCA AAACAAGTCG
AATGACCCCA AAACTGATAA TATCTATTTG CAATATACCC CGCGCTTGAA TGAAGTATTG
AACTCTTTGC TCACCACTAC ACAACTGGAA TCTGCCATAG CCATCAAATC ATCCTTATCC
ACTCTTATTC CAGATGCTGT CAGTTCCCAA TATGGCAATA ATATCCAGAA TGAACCTGTT
CAAGATGTGA TCATCTACGT AAAAGGTGGT GTAACTTTCG AGGAGGCAAG ATTGGTGTTT
GAATTGAGTG AAAGCAACAA GAAAATCAAC CTTGTCATTG GTGGAGACAA TGTTCTCAAT
AGTGAGATGT GGATGAAAGA GTTGTATGAT CGCGTAAATG ACTCGGAAAT TCCTGGTACT
GACCCGGCTA CCGATAGAAG AAAGCAACTT CGAGAGATTC TATGA
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| Protein sequence | MTLNLAKVSN VYFEKLFAVQ RNESSTNSEI KAKVLLVDKF TTPIISMCYT QSQLLQNDII
LIELIENQST LNVMKHLNCI VYIKPTRESI QSLIKELNNP HFSKYQLFLN NTISKGELER
LAEADEFEVI NQVTEIFQDY LILNDNLFTI NVSEPIANAI NPVVEESNSL VSLLLSLKKC
PIIKYESNSL ELKRLSSEIL YNINSNSNNN LFDDLNRKSD RPPLLLLLDR KNDPITPLIT
PWTYQSMIHE FLGIKKNIVA LTESKEQVTL NESQDKFYRE SMYLNYGDLT EKFQKYVEEY
KKETKQSSLE NLKTQNLSEL KKMLTKFPEF KKLSNNILKH LNLISEIDKE ISIQNLWEIG
ELQQTIICEL DTHQAIRQKL TEILDNPKVS TTNKIKLVLL YSIRFHNTSE LQNFIGKLNN
PLVTDPLPTL SQIALLKKFK TLFNSNFTTS TSGQNNSNNL GNIFQNKKIN INSFFNQNKS
NDPKTDNIYL QYTPRLNEVL NSLLTTTQSE SAIAIKSSLS TLIPDAVSSQ YGNNIQNEPV
QDVIIYVKGG VTFEEARLVF ELSESNKKIN LVIGGDNVLN SEMWMKELYD RVNDSEIPGT
DPATDRRKQL REIL
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