| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_82655 |
|---|
| Symbol | DBP3 |
|---|
| ID | 4837793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 1054194 |
|---|
| End bp | 1055855 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389108 |
|---|
| Product | ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family |
|---|
| Protein accession | XP_001383829 |
|---|
| Protein GI | 126134609 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATCACTAAAA TGGTTGAGGA ACATAAGAAC AAAAAGAGAA GACAGGAAGA CGGCCCTGCT
GACGTACCTG AAAAGAAGGT GAAAGTAAGC AAGTCTGAAA AGAAGGACAA GAAAGAAAAG
AAGGAAAAGA AGGAGAAGAA GGAAAAAAAG GAGAAGAAAG AGAAGAAAGA GAAGAAAGAG
AAGAAGGAAA AGAAAGTGAA CAAGGAAGAA AAGGAAGAAA AGGAAGACAA GAAGGAAAAG
AAAGACAAGA AAGAAAAGAA AGAAAAGAAG AAGTACGAGC ACACCGCCAC CATCTCTGGC
TCTGCCCAAT CTTCTCAAGG CTACACTCAG TCTGAATCGC TCACTAACTT ACCACAATCT
GAAATCGATA GCTTCTTAGC TACCAATGAA GTCACTATTG AAGATCCTCA CAGTTTGAAC
TTGAGACCAT TGTTGTCATT TGACCAGATA CAGTTGAACT CCAAGATCAG CGCAGTAGTG
AACAAGTTTC CCACGCCAAC CCCAATCCAG TCTGTCGCAT GGCCATACTT GTTGAGTGGA
AAAGATGTCA TTGGTGTAGC TGAAACCGGG TCTGGTAAAA CCTTTGCCTT CGGTGTTCCA
GCCATCAACA ACATTTTGAC TTTAGGTAAG TCTGGCTTGA GTGTGTTGTG TATTTCTCCA
ACCAGAGAAT TGGCCTCGCA AATCTACGAC AACTTAGTCG ATTTGACCAG TAACACTAAT
GTCAAGTGTG TTTGTGTTTA TGGTGGTGTT CCCAAGCATG ACCAAGTCAA GAACTTAAAG
AATGCCAACG TCGTCGTTGC TACTCCAGGT AGATTATTGG ATTTGATCGA AGATGGTGCC
GTCAACTTGG GCACTGTAGA TTACTTGGTT TTGGATGAAG CTGATAGAAT GTTGGAAACC
GGATTCGAAG ATGCCATCAA GGCTATCATT GGTGGAACCA AGAAGGAAAA CAGACAGACA
TTGATGTTCA CTGCTACCTG GCCACAAGAA GTCAGAAAGT TGGCATCTAC GTTCATGAAT
CAACCTGTCA AGGTCAGCAT TGGTGACAGA GATGAGTTGG CTGCCAACAA GAGAATCACC
CAAATCGTTG AAGTCATCGA ACCTTTTGAC AAAGAGAAAA AGTTGTTGGG CTTATTGAGA
CAATATCAGT CTGGATCCAA GAAGAATGAC AAGGTGTTGA TTTTTGCATT ATACAAGAAG
GAAGCTACGA GAATCGAAGG GTTGTTGAGA AGAAACTCCT ACAACGTTGC TGCAATTCAC
GGAGACTTGT CGCAGCAGCA GAGAACCAAT GCATTGAACT CTTTCAAGAA GGGTGAGTCG
AGTTTGTTGT TGGCCACGGA TGTTGCAGCC AGAGGTTTGG ATATTCCCAA CGTCAAGGTG
GTCATCAACT TGACCTTCCC CTTGACTGTA GAAGACTACG TTCATAGAAT CGGTAGAACC
GGTAGAGCTG GTCAAACTGG TACTGCCCAT ACTCTTTTCA CCGAACATGA AAAGCATTTG
AGTGGTGCCT TGATGAATAT TTTGAGAGGT GCCAACCAGC CAGTTCCAGA TGAATTATTA
AAATTCGGAG GTCACACCAA AAAGAAGGCT CATTCCGCTT ACGGTGCCTT CTTCAAGGAC
GTGGACATGA CGAAGACTGC CAAAAAGATC AAGTTTGATT AG
|
|---|
| Protein sequence | MVEEHKNKKR RQEDGPADVP EKKVKVSKSE KKDKKEKKEK KEKKEKKEKK EKKEKKEKKE
KKKKYEHTAT ISGSAQSSQG YTQSESLTNL PQSEIDSFLA TNEVTIEDPH SLNLRPLLSF
DQIQLNSKIS AVVNKFPTPT PIQSVAWPYL LSGKDVIGVA ETGSGKTFAF GVPAINNILT
LGKSGLSVLC ISPTRELASQ IYDNLVDLTS NTNVKCVCVY GGVPKHDQVK NLKNANVVVA
TPGRLLDLIE DGAVNLGTVD YLVLDEADRM LETGFEDAIK AIIGGTKKEN RQTLMFTATW
PQEVRKLAST FMNQPVKVSI GDRDELAANK RITQIVEVIE PFDKEKKLLG LLRQYQSGSK
KNDKVLIFAL YKKEATRIEG LLRRNSYNVA AIHGDLSQQQ RTNALNSFKK GESSLLLATD
VAARGLDIPN VKVVINLTFP LTVEDYVHRI GRTGRAGQTG TAHTLFTEHE KHLSGALMNI
LRGANQPVPD ELLKFGGHTK KKAHSAYGAF FKDVDMTKTA KKIKFD
|
|---|
| |