| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_77216 |
|---|
| Symbol | DPS1 |
|---|
| ID | 4837723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 84046 |
|---|
| End bp | 85818 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640389038 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | XP_001383652 |
|---|
| Protein GI | 126134255 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0017] Aspartyl/asparaginyl-tRNA synthetases |
|---|
| TIGRFAM ID | [TIGR00458] aspartyl-tRNA synthetase, archaeal type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.485977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTCC CTACTGAACA AATTGAGAAG TTGGCAGTTT CAGAAACTCC AGCTGAAACT
CCAGCAGCTT CTGCTGCTGT TGCTGAAACA GCCGAAGGAG CTGAACCCGT AATCTTGGGA
GAAGATGGCC AGCCCTTGTC CAAGAAGGCA TTGAAGAAGT TGCAAAAAGA AAAGGAAAAA
GCAGCCAAAA AGGCAGAAAG AGAAGCCCAA TTAGCCAAAG AAAAGGCTGC TAAAGAAGCC
GAAGCTGCTA ATGATCCAGC TAAGGAGAAC TATGGAAAGT TGCCATTGAT CAACTCGTCC
TTTACTGAGA ACCAAACCAG AGTACAATTC AAGGATTTGT CTGCTGCTAA CGACGGCGAA
CAGGTCATTT TCAGAGCCAG AGTACACAAT TCGAGACAAC AGGGTGCTAC AATGCTTTTC
TTGACATTGA GACAGCAATC GGAGTTGATC CAGACTCTTT TTAAAACCAA TAAGGAAACC
GATTCTAATG CAATTTCCAA GCAGATGGTC AAATGGGCTT CCTCCATCAA TTTGGAGTCT
ATTGTTGTTG TCCATGGTAC CGTCAAGAAG GTCGATGAGT TGATCAAGTC GTCTACGGTG
CAAGATGTCG AGATTCACGT GAGCAAAATC TACACCATTT CTGAGACTCC TGAACAATTG
CCATTGTTGA TCGAAGATGC TTCCAGATCT GAAGCAGAGG CTGAAGCTCT AAAATTGCCA
ATTGTCAACT TGGATACCAG ATTGGATGCT AGGGTCATTG ATTTGAGAAC TCCAACCAAC
CAAGCAATCT TTAAGATCCA ATCCGGTGTC TGTGCTTTGT TCAGAGAGTT TTTGGCCGGC
AGGGGCTTCA CGGAAATCCA TACTCCAAAG ATCATTGCTG CTGCCTCTGA AGGTGGATCC
AACGTATTTC AGATCAACTA CTTTAAAGGT TCTGCTTTCT TGGCACAATC GCCTCAGTTG
TACAAGCAAC AGTTGATTGC TGCTGACTTT GAAAAAGTGT ACGAGGTTGC TCCCGTTTTC
AGAGCTGAAA ACTCTAACAC CCACCGTCAC ATGACCGAGT TCATGGGTTT GGATTTGGAA
ATGGCTTTCG AAGAACACTA CCACGAAGTT CTTGACATTT TGGCTGACTT GTTCGTTTTT
ATCTTCACTG AGTTGAAGAA GAGATACGCC AAGGAAATTG CCACAGTCAG AAAGCAATTC
CCAGTGGAAG AATTCAAAGT GCCAGAAAGT GGTAAAATGG TGAGACTCCA CTTCAAAGAA
GGTATTGCCA TGTTGAGAGA AGCTGGTAAA GAGGTCGACG ACTTCGAAGA CTTGTCCACT
GAGAATGAAA AGTTGTTGGG TAAGTTGGTT AGGGACAAGT ACGATACCGA CTTCTACATC
TTGGACAAGT TCCCATTGGC CGTCAGACCT TTCTACACTA TGCCTGATCC AGAAGACCCA
AGATACTCTA ACTCTTACGA TTTCTTCATG AGAGGTGAAG AGATTTTGTC TGGTGCTCAA
CGTATCCACG ACCCAGCTTT GTTGACAGAA AGACTCACTG CCCACGAAGT CGACCCTAAC
GTTGCCGGTG TCCATGAGTA CCTTGAAGCC TTCACTTATG GTTGTCCTCC TCACGCTGGT
GGTGGTATTG GCTTAGAAAG AGTGGTTATG TTCTACTTGG ACTTAAAGAA TATCCGTCGT
GCTTCGTTGT TCCCAAGAGA CCCAAAGCGT TTGAGACCAT AGATCTGTAT AAAGCGTGAT
AGTTTTGATA TTTAAATATA ATCAAGTTAT TAT
|
|---|
| Protein sequence | MSVPTEQIEK LAVSETPAET PAASAAVAET AEGAEPVILG EDGQPLSKKA LKKLQKEKEK
AAKKAEREAQ LAKEKAAKEA EAANDPAKEN YGKLPLINSS FTENQTRVQF KDLSAANDGE
QVIFRARVHN SRQQGATMLF LTLRQQSELI QTLFKTNKET DSNAISKQMV KWASSINLES
IVVVHGTVKK VDELIKSSTV QDVEIHVSKI YTISETPEQL PLLIEDASRS EAEAEALKLP
IVNLDTRLDA RVIDLRTPTN QAIFKIQSGV CALFREFLAG RGFTEIHTPK IIAAASEGGS
NVFQINYFKG SAFLAQSPQL YKQQLIAADF EKVYEVAPVF RAENSNTHRH MTEFMGLDLE
MAFEEHYHEV LDILADLFVF IFTELKKRYA KEIATVRKQF PVEEFKVPES GKMVRLHFKE
GIAMLREAGK EVDDFEDLST ENEKLLGKLV RDKYDTDFYI LDKFPLAVRP FYTMPDPEDP
RYSNSYDFFM RGEEILSGAQ RIHDPALLTE RLTAHEVDPN VAGVHEYLEA FTYGCPPHAG
GGIGLERVVM FYLDLKNIRR ASLFPRDPKR LRP
|
|---|
| |