Gene PICST_67215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_67215 
Symbol 
ID4837815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp217261 
End bp218427 
Gene Length1167 bp 
Protein Length388 aa 
Translation table12 
GC content44% 
IMG OID640389130 
Productpredicted protein 
Protein accessionXP_001383671 
Protein GI150864722 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.546499 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTACA CCCTCGAGAA GAAAGTCGCT AATGCCCACT TTCCCAGAGC ACCTGGTAGT 
ACTCTTGTTT CTTCTGAGAG ATTAAATGTA GTCTACAACA AGTACAAATC TACCACTACA
ATCCCAGCAG ATGCCATTCG TTTCAATTTC GTCTTTGCTC ATGGTACAGG AATGAACAAG
GCCATTTGGC ACTTCCACAT CACTCAGTTG TTTGAATGGC AGGCGAAAAG CAATGGCAAG
ATCTACATCG ACACAATTGT GTCAGTCGAC GCAGTTGGCC ATGGTGATTC TGGTGTTCTC
AACGATGGTA AACTTGGCTG GATTTCCAGA TGGGACGAAG GAGCAAGGGA CTTGCTTGAA
GTAATCAGAC AAGAACAAGC CTCCACAGGA GACTTGACCA ACGATCTCAA GTCGAGAAAT
ATTCTTGTGG GCCATTCTAT GGGTGGTTTC CTGTCTCTTT TTGCTGGCTT CCACGAACCA
AACTTGGTTG ACTCTATCGT TGCTGTGGAA CCTGTGTTGT ACGCTAATGC AAAGGAAATA
GGTAAGTTTG CCAAAAGATT CGCCATGATT GGCCTGATGC TTGTGGACGA GTTTGCAAGT
TACAAGGATT ATGAGGATTT TTTCAAGGTA TACTCCTTCT ACAAGAATAT TGATCCAAGA
GTTATGGAGG ACTTTATCCA GGACGAGTTG CTTGTTGTAG CGGACCCCGT TTCTGACAAG
AAGTCGTTCA AGACAAAGAC ATCCAAGGCT GCTCAAATAG CAGCTTACAC ATCAGGAATG
CCGTCGCTTA TCGCAGGTAT GGACGAATAC CAACATATTA ACGTTCCAAT CACCCATGTA
GCTGGCAAGA CTGCCAAGTG GAATGCTCGT GAAACAAATC CATTTTTCAG AGGTGCCATT
AAGCCAGAAT ATTTGGTTGG CGTCTATGAC GTTGAAGGTG GTGAGCACTT ACTCCATGCC
GAACAGCCTG ACGTAATGGT TAAAATACTA CAAGAACATA CTACAAAGAG ACAAGTAGAC
TACCTGAAGC ACCTCCAAGA AGTACCAGAA TTCAAGTTCA AAGGCTCCAA AGAAAAGATA
CTGGAAGCTG AAGTTGAAGG AAAATTGCTT CAGGGACGTT TCCTTGAATT GCACGGTTAC
GGTTACAAGC TCCCACCCAA GTTGTAG
 
Protein sequence
MSYTLEKKVA NAHFPRAPGS TLVSSERLNV VYNKYKSTTT IPADAIRFNF VFAHGTGMNK 
AIWHFHITQL FEWQAKSNGK IYIDTIVSVD AVGHGDSGVL NDGKLGWISR WDEGARDLLE
VIRQEQASTG DLTNDLKSRN ILVGHSMGGF SSLFAGFHEP NLVDSIVAVE PVLYANAKEI
GKFAKRFAMI GSMLVDEFAS YKDYEDFFKV YSFYKNIDPR VMEDFIQDEL LVVADPVSDK
KSFKTKTSKA AQIAAYTSGM PSLIAGMDEY QHINVPITHV AGKTAKWNAR ETNPFFRGAI
KPEYLVGVYD VEGGEHLLHA EQPDVMVKIL QEHTTKRQVD YSKHLQEVPE FKFKGSKEKI
SEAEVEGKLL QGRFLELHGY GYKLPPKL