| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_56933 |
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| Symbol | YBR1 |
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| ID | 4837740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | + |
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| Start bp | 129353 |
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| End bp | 130837 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640389055 |
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| Product | General substrate transporter |
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| Protein accession | XP_001383306 |
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| Protein GI | 150864477 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.19707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATA GTCTTTCGGA TCCCAAATTG ACGGCCACAC TTCTAACGAC TGTGTCAGTG
ATCTGTCTTG GTTCGCTTCA GTTTGGTTAC CATATGGCTG AGTTGAATGC ACCGGAATTA
CTATTGTCAT GTAAGATATC TGTTCCAGGG CTGGTACCAT TTGAAAGTCT GTGGTTTGGA
TCGCATGGGT TTGAACGTTG TATCGAACTT TCGCCGCAGC AGGTTGGCTT GGTGACATCG
ATCTTCAGTA TTGGAGGATT GATTGGTTCT TTCTATGTTG GAACCATAGC TGATGCCATT
GGTAGAAAGA AGACGAGCTT GCTCCATTGT GTATTCTTCT TCGTGGGCTC TACCTTGAAC
GGGTTGAGCA ATTCCTATGT TTCATTGTTG TTCGGACGTT TTGTCAGTGG TTTGGGTGCT
GGCTCTGCTA TTGTTATCAC TTCGTTACTT ATCAACGAAA TTGCCCCTCC AACTTCTAAA
GGGTTGTTGG GCTCGATGAA TCAAGTCAGT ATAAACGTAG GAATATTATT CACCCAATTG
TTGTCTTTGG CCTGGTGCAC AGATAACGAC TGGCGTCTTC TACTCTTCAT GGCTTCGTTG
CTTGCCATTG TAAACTTCTT GCTTATCTTC TTCTACGTGG AAGAGTCTCC TGTTTGGTTG
CTCAATACGG GAGATAATGT CAAAGCATTC ACTGTGTTGC ATAGATTGAG AGGTGGAAGC
TATTCTGCGT CTCAGTCAGA AGTCAACAGC TGGAAGAAAC ACGGTGCTGG TACCGGTGAT
GAAGGCGTTA TCTTGCTAGA CAACGGTGGG TCACTTGAAG AAGGCGAAGG ACAAGTGAAT
GCTTCTGCAT CCTCAACTGT AACTTTGAAG GAATACTTGA GTTCGCGCGA GTATAACAAT
TCAAAACTCG TAGCTACTGG TATCTTGATT CTCCAGCAAT TGGACGGAGT CAACTCCATC
ATCTTCTACG GAGTTTCGGT ACTTGTAGCG ATCTTCCCTG ACCATGCTAT TTCCATCAAT
TGTTTGATTT CGACTGTCAA CGTTGTAGTA ACATTCTTGT CTGCCACCGT TGTGGATAGA
TTGGGACGTA AACCTCTTTT ACTTACCTCA GTGACATTCT TGGGAATCCT GTCTGCTGTG
ATGGGATTGG GTATTATCAA CACAAGTTCG GTTTTGTCCA TCGTTGGAAC GTTCACATAC
ATAACCTTCT TTGCAATAGG GTTGGGGCCT ATTCCATTCT TGTTGGTTGG AGAAGTAACT
CAACCAAGGG CCAAGGCTCT GGCTCAAAGT TGGGGTACTA CCATGAACTG GTTCGCTACC
TTTGTAGTAG GTTACGCATT TCCCATGGTG AAGAACGCGA TTGGTGGGTA TGTTTATTTC
TTCTTCACCG CTATGTGTGC AGTGAGTTAC TGGTTTATCC AAGCCCATAT TCCTGAGACA
AAGGGTCATG ATTCCTACGA AGAAGTCTGG GGCATAGCTA ACTAG
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| Protein sequence | MTNSLSDPKL TATLLTTVSV ICLGSLQFGY HMAELNAPEL LLSCKISVPG SVPFESSWFG
SHGFERCIEL SPQQVGLVTS IFSIGGLIGS FYVGTIADAI GRKKTSLLHC VFFFVGSTLN
GLSNSYVSLL FGRFVSGLGA GSAIVITSLL INEIAPPTSK GLLGSMNQVS INVGILFTQL
LSLAWCTDND WRLLLFMASL LAIVNFLLIF FYVEESPVWL LNTGDNVKAF TVLHRLRGGS
YSASQSEVNS WKKHGAGTGD EGVILLDNGG SLEEGEGQVN ASASSTVTLK EYLSSREYNN
SKLVATGILI LQQLDGVNSI IFYGVSVLVA IFPDHAISIN CLISTVNVVV TFLSATVVDR
LGRKPLLLTS VTFLGISSAV MGLGIINTSS VLSIVGTFTY ITFFAIGLGP IPFLLVGEVT
QPRAKASAQS WGTTMNWFAT FVVGYAFPMV KNAIGGYVYF FFTAMCAVSY WFIQAHIPET
KGHDSYEEVW GIAN
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