| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_42812 |
|---|
| Symbol | CHS1 |
|---|
| ID | 4838262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 1462885 |
|---|
| End bp | 1465878 |
|---|
| Gene Length | 2994 bp |
|---|
| Protein Length | 997 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640389577 |
|---|
| Product | chitin synthase |
|---|
| Protein accession | XP_001383564 |
|---|
| Protein GI | 150864649 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.676694 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTT TCGAAGATGA GGATAACCCG TTTAGGGAGA ATCAGCCTGC CTTACCCAAT
GCTGCCTTTA CAAGTGACAG AACTTCTCCC AAAAGATACC ACCAATTACA AGACGAAGAG
GATGCGGACG ACGATTTCAT GGCTTTTCCA CTGTCTACAC ATCAGAGACA ATCTCCAAAT
ATCTTTACCA GAAGTACTGC TAGAGTAAAT TCTAAATTAA AAGGAAATAA CTTAGGCGAT
ACTCCAAACT TGCTGTTCGC TAACAATTCT ACCCCTAGAG CTCAATTTAC TACAAGGGAA
TCTCCAAAGA GGCAGAAAAA GAGGGAAGTG CTAATTGTTG ATCATGAAGA TGATGAAAAT
TATGGATCCC CTACGAGGTC ACAGTTCGGC GGGAGCTCTA TTGCCAGTGA AAGGTTTTTA
GAACCACCGC AACCGATTTT CTCAAGAGAA ACATTCGCTG AAGCCAACAA CGCAGAAGAC
GAAAACTCAA CAATAACAGA TGAAAAGGAT AATTATGATT ATAATTCCTA TCAGAAAGCA
CATGAACTCG AAGAGAGGTC ATTGTATTCA GAGTCTACTG CTTATAGTGG GTCGTCATAT
TTATCACAAC CAACACACGC AGAGAGTGAC TATTTTGGAG CATCAATTGA TGGCAATATC
ATGAGTAATA TCAACAATGG CTATGTTCCT AAAAGAGAGA AGACATTAAC CAAGAGAAAA
GTTAGATTGG TCGGTGGTAA GACAGGCAAT CTAGTGTTGG AAAATCCAGT TCCTGAAGAA
CTTCGAAAGG TGCTAACACG AACTGAATCG CCGTTTGGAG AATTCACAAA CATGACTTAT
ACGGCTTGTA CGTCTGATCC TGATAATTTC ATCAGCGACG GATTCAGTCT CAGGGCTGCC
AAATTCGAAA GAGAAACCGA GATTGTCATC TGTATCACTA TGTACAACGA AGATGAGCAT
GCATTTGCCA GAACCATGCA TGGGGTTATG AAAAATGTTG CCCATTTATG TTCGAGGCAT
AAGTCCAAAC TATGGGGCAA GGAAGCATGG AAGAAAATTC AAGTCATTAT TGTAGCAGAC
GGAAGAAACA AAGTTAACGA ATCTGTTCTC CAATTATTGA CAGCCACAGG ATGTTATCAA
GACAATTTGG CTAGACCATT TGTAAACAAC AAGAAGGTAA ATGCACATTT ATTTGAATAT
ACCACACAAA TATCAATCGA TGAAAACTTG AAATTCAAGG GAGATGAAAA GAACTTGGCA
CCAGTTCAAG TATTATTCTG CCTTAAAGAA CAGAATCAGA AGAAAATTAA TTCTCATAGA
TGGTTGTTCA ATGCCTTCTG TCCAATTTTG GATCCAAACG TTGTGGTTTT GCTTGATGTG
GGAACTAAAC CAGATAACCA CGCTATCTAT AATCTATGGA AAGCTTTTGA TAGGGATTCC
AACGTTGCTG GCGCTGCTGG TGAAATCAAA GCAATGAAAG GAAAGGGGTG GATCAACTTG
ACGAATCCAT TAGTAGCTTC TCAAAATTTT GAGTACAAAA TGTCCAACAT ATTGGATAAA
CCTCTTGAAT CATTGTTTGG TTACATCTCT GTGTTACCTG GGGCATTGTC TGCATACAGA
TATAAAGCAT TGACAAACCA TGAAGACGGT ACCGGTCCTT TGGCAGCATA TTTCAAGGGA
GAAGACCTTT TAAATGACCA TCATTCGGAC AAGCAGAACA GTAAAACAAA TTTCTTTGAG
GCAAATATGT ATCTTGCAGA AGACAGAATT TTATGTTGGG AGTTAGTCGC AAAAAGAAAG
GAGAATTGGG TTTTAAAATT TGTCAAGCTG GCTACTGGTG AAACAGATGT TCCCGAAAAT
CTACCTGAAT TTATATCACA AAGAAGGCGT TGGATCAATG GTGCTTTCTT TGCAGCGCTT
TATGCATTAC GACACAGCAA TAGAATTTGG GCGACCGATC ATTCCTTCGC TCGAAAATTT
TGGTTCCAGA TTGAATTCGC TTATCAATTC GTTACACTTG TCTTTTCATT CTTTTCATTG
AGTAACTTCT ATTTGACGTT TTACTTCTTG ACTGGTTCAT TAGTGTCAAA CAAGAACTTT
GGTCATAATG GTGGATTCTG GATTTTTACA CTCTTCAACT ATTTGTGTAT TTGTATTTTG
ACTTCGTTGT TTATTGTATC GATAGGAAAC AGACCACAAG CTTCCAAGAA TATTTTCAAA
ACTTTGATTA TCCTTTTGAC CATTTGTGCC TTATACGCAT TGATAGTCGG GTTTTATTTT
GTTTTCAACA CGATCACAGA ATTTGGAATG GGAGATTCGT CCACCTATGT CCTTGTGAGC
ATTGTTGTTT CTTTGTTAGC AACGTATGGC CTATATTTCT TGATGTCTTT CCTATACATG
GATCCTTGGC ACATGTTTAC ATGTTCTATC CAATACTTCT TGATGATACC TTCATACACC
TGCACATTGC AGATATTTGC TTTCTGTAAC ACCCATGATG TTTCCTGGGG TACAAAAGGT
GACAATAACC CCAAGATTGA CAAGAGTAAC CAATACATTA TTGAGAAAAA TGACAAAGGA
GAATTTGAAG CTGTCGTAGT TGATGTGAAT ATAGACGAAG TTTACTTGGA GACTTTGTAC
AACATCAGAG CTAAAAGATC AAATAGAAAG GTTGCTCATG TACATAAGGA AAAGGCTCCT
ATGGAAGGAG AAGACTATGC AAAGGATGTT CGTACCAGGG TTGTTTTAAT TTGGATGATA
GCAAACCTAG TATTCATCAT GACAATGCTT CAAGTTTATT CTCCTGGCGA GACTACAAAG
AATATTTACC TTGCCTTCAT CTTATGGACT GTCGCTCTAT TGTCACTTTT CAGAGCAATT
GGCTCCTTGG GATACCTTTT ACAAAACCTT GCAAGATTTG TCGTTGAGAG CAGAAGCAAA
TGGTTACACA GGAGAGAAGG TTATGCTGTA CCCTCTCATA ATCCTTTGAA TTGA
|
|---|
| Protein sequence | MNPFEDEDNP FRENQPALPN AAFTSDRTSP KRYHQLQDEE DADDDFMAFP SSTHQRQSPN
IFTRSTARVN SKLKGNNLGD TPNLSFANNS TPRAQFTTRE SPKRQKKREV LIVDHEDDEN
YGSPTRSQFG GSSIASERFL EPPQPIFSRE TFAEANNAED ENSTITDEKD NYDYNSYQKA
HELEERSLYS ESTAYSGSSY LSQPTHAESD YFGASIDGNI MSNINNGYVP KREKTLTKRK
VRLVGGKTGN LVLENPVPEE LRKVLTRTES PFGEFTNMTY TACTSDPDNF ISDGFSLRAA
KFERETEIVI CITMYNEDEH AFARTMHGVM KNVAHLCSRH KSKLWGKEAW KKIQVIIVAD
GRNKVNESVL QLLTATGCYQ DNLARPFVNN KKVNAHLFEY TTQISIDENL KFKGDEKNLA
PVQVLFCLKE QNQKKINSHR WLFNAFCPIL DPNVVVLLDV GTKPDNHAIY NLWKAFDRDS
NVAGAAGEIK AMKGKGWINL TNPLVASQNF EYKMSNILDK PLESLFGYIS VLPGALSAYR
YKALTNHEDG TGPLAAYFKG EDLLNDHHSD KQNSKTNFFE ANMYLAEDRI LCWELVAKRK
ENWVLKFVKS ATGETDVPEN LPEFISQRRR WINGAFFAAL YALRHSNRIW ATDHSFARKF
WFQIEFAYQF VTLVFSFFSL SNFYLTFYFL TGSLVSNKNF GHNGGFWIFT LFNYLCICIL
TSLFIVSIGN RPQASKNIFK TLIILLTICA LYALIVGFYF VFNTITEFGM GDSSTYVLVS
IVVSLLATYG LYFLMSFLYM DPWHMFTCSI QYFLMIPSYT CTLQIFAFCN THDVSWGTKG
DNNPKIDKSN QYIIEKNDKG EFEAVVVDVN IDEVYLETLY NIRAKRSNRK VAHVHKEKAP
MEGEDYAKDV RTRVVLIWMI ANLVFIMTML QVYSPGETTK NIYLAFILWT VALLSLFRAI
GSLGYLLQNL ARFVVESRSK WLHRREGYAV PSHNPLN
|
|---|
| |