| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_30690 |
|---|
| Symbol | |
|---|
| ID | 4838151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 685816 |
|---|
| End bp | 690564 |
|---|
| Gene Length | 4749 bp |
|---|
| Protein Length | 1582 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640389466 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383415 |
|---|
| Protein GI | 150864553 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.781261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.243077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTAG GTTCGGGAGC TGGATCCGGA ACAAGGTCCC GGTCGGCTAC TTTAACTGGA
AGATCGGGCC GAGGGAATAT CACAGCAGAC TCCACGATGA TTTCTGCGAC CAGCGTAGGC
GCTGGGGCTC CATCAAATAT CGCTGGGGCT CCCGGAGGAA TTCTGGGAAG CTTTCCACAT
GACATACCTC CGGATTTGGT GCTATTACTA CAGAAACTCG AAGAGGATTT CACAGTAAAT
AAGACAATCG ACCAATGGAC ATATATCAAC CGTCGTGAAG AGATCATGCA ATCGGTTACA
AAACTTCACC AACAACAACA GGAGTTGCAG GAACAGCAAA TAGACCCTGA TCTGCTATCA
AAGCCATTGT TTCCTCGAAA ACTGGCAGAA TTCTTGAAGG AACATAAATT TCTGCTGGAG
AAACTAGTAG ACGTTTTGGC CGGTAGGGCC AATACATATA CTGCAGAGCA GGCTTTTTTA
GTGCTTGACT CAAAGGGAAA GGAAGTCAAT TCTATCTCCT GGGAAAAACT CTACTTGAAA
TCTGTGAAAA TAGCTTCTGA AATCCGGCAC AAGTCTACAT TGAAAAATGG AGACACTGTC
GTGTTGCTTT ATAAGGATGG AGAAGTAGTA GAATTCGTTG TAGCTTTTCT CGGTTGTATC
ATGTCAGGTG TAACAGCTAT TCCCATTCAT CAGGACATAT CTATTCATGA AGTTTTGGAC
ATTATCAACT TAACTGGCAC CAAACTTGTG CTCTATTCAG AAGTAGTAGC TAAAGAACTT
GATCGTCTCA ATGCTCAAAG TCAGAGAATA AACTGGCCCC CTAAACTTTT ACGATGGAGG
ACGACTGAAT TTGGGTCCGC AAAGAAGTCT GAACTTTCCC ACTGGCTTTC GCGAGAGAAC
CAGAAGAAAA TCGACTTGTC CAAGACGCAG CTAGCATACG TAGAATTCTC CAGATCTCCG
GTAGGAGAAT TGCGAGGAAT TGCGCTCAGT TACAGAACTA TATTGCATCA GATGAACTGC
CTTAATGTGT CATTACTGAG TTTGCCTGAT TCTGGAGGCG GTCTTCAGCG AAGTTATAAA
GAATACAAGA GAAACAAGAA AGTAGTTTTA GCTACTCTTG ATATCCGATT TTCCATCGGA
TTAATTCTTG GAGTCTTATT TACAATCTAC TCTGGTAATG TTCTCATATG GGCACCTCAG
AGAGTGATGG AAATTCAGGG TTTATATGCC AACATTATTA CCAAGTGTCG TGCTTCGTTG
TTGCTAGCTG ACTATATTGG TTTGAAAAGA GTTACCTATG ATTACCAGCA ATCTCCCAAC
GCCACGAGGT ATTTTTCAAA AACACAGAGA GTTGATTTTT CCAGTGTAAA GTGGGTCTTG
GTCAATGCAT TAACCATTGA TGGAGAATTC ATGGAAATCT TGGCTCTGAG ATACTTGAGG
CCTTTGGGAT GTCAGCATCC GCAGAATGCC ATTATACCTA TGTTGACTTT AAGTGAATAT
GGTGGAATGG TGATATCATT AAGAGACTGG ATTGGAGGAA GAGATAAAAT GGGCTTGGCT
AATACTTCAG AGGAAGATGA CGCAAACTTC AACGACTTAT CTGCTGTTCT AATTGACAAA
GAAGCGTTAT CCAGAAATCT TGTCACTATT CTAGATACAA ATCCTCTAGC TTCAGACGAA
GTTCCACACA ACGCATTGCG TGTTGATGCC TTTGGATACC CTTTGCCAGA CGCTACACTA
GCAGTAGTGA ACCCAGAACT GTCTATCTTA GTACGTAAAG GAGAACTAGG AGAAATATGG
ATAGATAGTC CTTGTTTATC AGGAGGGTTT TATGGATTGA GGAACGAGTC GAAACTGATT
TTCCACGCCA AATGTCGTGA TGCTAACGGT ATGCTTGAGA TGGATTTCTT GAGAACAGGT
TTACTTGGAT TCGCTCACAA CGGTAAGGTG TTTGTTCTTG GGTTGTATGA AGATAGAATT
AGGCAAAGAG TCAGTTGGAT TGACCAAAAA TTGTATCAGA AGTTGAACAG AGACTTGGTC
ATTGGGAACG GTTCGAGATA CCATTATTCT TCTCATTTAT TGGCTACGTT GGCCAGTGAA
GTGAGACAAG TCTATGACTG TACGATTTTT GATGTTTTCA TTGGCAATGA ATACTTACCT
GTAGCTATCG TGGAAGCTGA AGTTGTACGT AAGCTAGTGG ATGACTCAGG TAATATTGAA
CCAAATGCCA ATAGTGGTTC GTCTAGTACA AACAAGCCAG GAGAAGGCGA AGTTCAATTC
AATGCCCTTC CACATAACGA ACCTGTTTTG AACACGATTG CCCAGAACTG TTTCGATACA
TTGTACAAGA GACACTACTT GAGGTTGTAT TGTGTTGTTG TGGTGGATAT CGATACGTTA
CCGAAGATCA TGAGGAGTGG AGGCAGAGAA ATTGCCAACA TGCTTTGTAA GAAGAGGTTC
TTAGAAGGAA GTTTGAAAGC TGAATTCGTG AAATTCTTTG TACGCAAATC AATAAGTATG
GTTCCTCATG GTGAAGACGT CATTGGTGGC ATTTGGTCGC CATATGTTTC TGAGTTGAGA
AATGTAGCAT TACAAAAGTT TCCAAACCAA TTTTCGACTA TTGACTACCG TGAGAAATCT
CTCGATGACA AGACTGGAGC TCCTTTGACG GATTTTAAAA CAATTGTAGA TATCTTGAAA
TTCAGAGTTG CCAGTTCTGG AGACTCTGTT GCGTTCCAGA ATACTGATAG TTCAGGAAAG
GGTTCTAAAC CGTTGACTTG GAAAAAGTTC GAACATCGCG TCTACGCCGT CTGCAGTTAC
CTTATTGAGA AGACCAATGT GAAGCCAGGT CAATACGTCA TATTGATGTA TTCATTGTCG
GAAGAGTTCG TTGTTGCCGT ATACGCCTGT TTGATTTGTG GTATCATTCC AATTCCCATG
TTGCCATTTG ATTCCAACAG GATCGGCGAA GATTTCCCTG CCTTTGTTGG TGTTATTCGT
GATTTCGATG TGAGTGAGAT TTTAGTAAAT GATGAAGTGG AAAAATTCTT GAAGAATGGC
CCAGTTGCCG ATTCATTGAA GAAGATAGCT CATCGCAAGT CCAAGATTGT CATCAAGAAT
ACATTGAAAT TAACCAAGGT ATCCAACATA GCTTCCTTAA ATTCTAAGGT GGCCAAGTAT
CAGGCAGCAG TAAACTTCAG AGATGAGAAT ACTACAGCTT TGGTTTGGTT GAATTTCACA
TCTGATCACT ATAGAGTGGG TGCCACGTTG AGTCACAAGA ACATTATTGG TATCTGTAAA
GTTTTTAAAG AAACGTGTAA CTTATCTTCC AAATCAGCTA TTGTTGGATG TGTTCGTCAT
TCTTCGGGAA TTGGCTTTAT TCAATCTGCT TTACTTGGAG TGTTTTTGGG TACCACAACT
TATCTCACGT CACCATTCAG TTATGCTGCC AATCCACTTG CTTTTTTCTT ATCCCTTGCT
CGTTGCAAGG TTAAAGACGT TTTTGTGACG GAACAGATGT TGAAGTATGC CGCAGTCAAG
TTTACACCCA AGGGTTTCAA TTTGACAAAC TTGAAGAACA TGATGATCAG TACTGAAAAT
CGAGTTGAAA TAGACTTACT TAGAAAGATT GCTAAGGTAT TTCAACCTAC AAAGTTGAGT
GCTGCATCGA TGTCAACTGT GTACAACCAT TACTTCAATC CTATCATTGC AACTAGATCA
TACATGACAG TAGCTCCGGT GGACCTTTTC TTAGACCCAA TAGCTTTAAG GCAGGGGTAT
GTTTCTGTGG TGAATCAAGC CGAAGTTCCA AACGCATTAC ATATACAAGA CTCTGGAATG
GTTCCAGTTT GTACTGAAAT CGCCATTGTG AATCCAGAAA CAAAGAGAAT ATGCAAGGAA
GGCGAATTTG GAGAAATATG GGTTTGTTCT GAAGCCAACT TGACCTCTTT CACCAATGGT
CCCAAGGGCC CTGTAGACAA GTTTAGCGAT ATCCAGTTCA ACGGAATTAT AGCTGATGGA
GACCCCAACG TAGTTTATTT GAGAACGGGA GATTTGGGGT TCTTACACCA TATATCAATT
ACCAAGAATG GAGGTGACCC CAACGACAAT AATGATATCA CATCGTTCCA GCCACTTTTT
GTATTGGGCA AGATAGCAGA TACTTTTGAA GTTATGGGTT TGCACTACTT CCCGATCGAT
ATTGAAAACA CTATCGAATC TTGTCATGCA GACATGTTCA AGAATGGCTC ATGTATCTTC
AAGTGTGCCG ATTACACTGT GGTTGTATGT GAATCCAAGA GACATAGATA TTTTGCCTCT
CTTGTTCCCT TGATTGTCAA CACTGTTTTG AGTAAACATC ACATAGTAGT TGATATTGTG
GCCTTCATCA GAAAGGGCGA ATTTCCTATT TCCAGGTTGG GTACCAAACA AAGAGCCAGA
ATTGTCGATG CGTGGGTTCA AGGAGTTATT CCTATTATTG CTTCGTATGG TGTAAATTAT
GGAGAGAATA GTATGATCAA GTTGGTGAAA GAAATCGACG TTGTTGCCAG AGACCACCCA
ATCACGGGTT TAAAGAATCC AGCTTTATCG TACTACGATA CTGATCTTGA AGAGATAGAG
GATGTATTTG ACGACAATCG GGAAGGTTTA GTTTTGAATG ATGGCAAATT TCCCGAGGGG
GTTGACAGAA GAGCAGAGTT TTCTGTGGGG AACTACAGCA CCAGCACGAA ATCAGAAAGT
ACTAGCTAG
|
|---|
| Protein sequence | MSLGSGAGSG TRSRSATLTG RSGRGNITAD STMISATSVG AGAPSNIAGA PGGISGSFPH
DIPPDLVLLL QKLEEDFTVN KTIDQWTYIN RREEIMQSVT KLHQQQQELQ EQQIDPDSLS
KPLFPRKSAE FLKEHKFSSE KLVDVLAGRA NTYTAEQAFL VLDSKGKEVN SISWEKLYLK
SVKIASEIRH KSTLKNGDTV VLLYKDGEVV EFVVAFLGCI MSGVTAIPIH QDISIHEVLD
IINLTGTKLV LYSEVVAKEL DRLNAQSQRI NWPPKLLRWR TTEFGSAKKS ELSHWLSREN
QKKIDLSKTQ LAYVEFSRSP VGELRGIALS YRTILHQMNC LNVSLSSLPD SGGGLQRSYK
EYKRNKKVVL ATLDIRFSIG LILGVLFTIY SGNVLIWAPQ RVMEIQGLYA NIITKCRASL
LLADYIGLKR VTYDYQQSPN ATRYFSKTQR VDFSSVKWVL VNALTIDGEF MEILASRYLR
PLGCQHPQNA IIPMLTLSEY GGMVISLRDW IGGRDKMGLA NTSEEDDANF NDLSAVLIDK
EALSRNLVTI LDTNPLASDE VPHNALRVDA FGYPLPDATL AVVNPESSIL VRKGELGEIW
IDSPCLSGGF YGLRNESKSI FHAKCRDANG MLEMDFLRTG LLGFAHNGKV FVLGLYEDRI
RQRVSWIDQK LYQKLNRDLV IGNGSRYHYS SHLLATLASE VRQVYDCTIF DVFIGNEYLP
VAIVEAEVVR KLVDDSGNIE PNANSGSSST NKPGEGEVQF NALPHNEPVL NTIAQNCFDT
LYKRHYLRLY CVVVVDIDTL PKIMRSGGRE IANMLCKKRF LEGSLKAEFV KFFVRKSISM
VPHGEDVIGG IWSPYVSELR NVALQKFPNQ FSTIDYREKS LDDKTGAPLT DFKTIVDILK
FRVASSGDSV AFQNTDSSGK GSKPLTWKKF EHRVYAVCSY LIEKTNVKPG QYVILMYSLS
EEFVVAVYAC LICGIIPIPM LPFDSNRIGE DFPAFVGVIR DFDVSEILVN DEVEKFLKNG
PVADSLKKIA HRKSKIVIKN TLKLTKVSNI ASLNSKVAKY QAAVNFRDEN TTALVWLNFT
SDHYRVGATL SHKNIIGICK VFKETCNLSS KSAIVGCVRH SSGIGFIQSA LLGVFLGTTT
YLTSPFSYAA NPLAFFLSLA RCKVKDVFVT EQMLKYAAVK FTPKGFNLTN LKNMMISTEN
RVEIDLLRKI AKVFQPTKLS AASMSTVYNH YFNPIIATRS YMTVAPVDLF LDPIALRQGY
VSVVNQAEVP NALHIQDSGM VPVCTEIAIV NPETKRICKE GEFGEIWVCS EANLTSFTNG
PKGPVDKFSD IQFNGIIADG DPNVVYLRTG DLGFLHHISI TKNGGDPNDN NDITSFQPLF
VLGKIADTFE VMGLHYFPID IENTIESCHA DMFKNGSCIF KCADYTVVVC ESKRHRYFAS
LVPLIVNTVL SKHHIVVDIV AFIRKGEFPI SRLGTKQRAR IVDAWVQGVI PIIASYGVNY
GENSMIKLVK EIDVVARDHP ITGLKNPALS YYDTDLEEIE DVFDDNREGL VLNDGKFPEG
VDRRAEFSVG NYSTSTKSES TS
|
|---|
| |