| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_88040 |
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| Symbol | ECM16 |
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| ID | 4837378 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 117308 |
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| End bp | 121266 |
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| Gene Length | 3959 bp |
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| Protein Length | 1270 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640388693 |
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| Product | part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) ExtraCellular Mutant DEAH-box protein involved in ribosome synthesis |
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| Protein accession | XP_001382786 |
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| Protein GI | 150864090 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0404872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGAAAT ATAGAAAGAG ATTTAACGAG AAGGCTCGTT CAGGCATGCT TGCTAAGCAG
GCAGCCTTAA GGAAAGTCAG AAACAAACAG TTCAATAGAC CCACAGAAGA AGCAATCAAT
GGAGATGAGC CAGCAGCTGC GAATGTAGAT CCTACTAAAC TTTTCAACGA AGAAAACTCC
AATTCTGAAA TACTAAAGCC CATGACAGAC GAAGAAAAAT TGGAACGCAA GAGAACTTTG
GAAGCCACCC TATATGCCGA AAACCAGAAG GAGTCCAAAA TGTCGAGGTC TAAGAGAAAG
AGACTTGACA AGTATATAGA CCATCAGTTA AAGAGAGAGG AAAAGAAAGA TTTATTGGAA
AAATTGTCCA AAACAAAGAT AGATACTAGC ATTTTGACGG CATCCAAGAA CTTAGGAAGG
GGTAAACTGA CAAAAAGAGA AGATATGATA GAAGCTTTAG AACTCGAAAG GCAAGGAAGA
GCAGACGAAT GGACAAAGGA TGTACTTTAC GAAACAAGGG AAGTTAAGGA ATGGGACGAA
GATGATGGTC AATTTTATGG CGAACCCACT CAGGAGGAAT CTTCCATCAA AGATAAGAGC
GAAAATTCTG AAATAGATGA TCAAGATTCT GACGCAGACT CCTTATCTGA ATTTGGTGAA
ACTACTGCTT CGACAACATC TTCTTTTGTA GATAACCGTC CAGCTAAATT TGGAGGTAGT
GGTTCAGGGT TTGGATTCGC AAACTTACCG AAGATTGAGA GATCTACACT GCATAAAAAG
TATACATGGA GACTTAAGGT TGAACAAGAG GAAAGGAAGA GGTTGAAGTT GGCCGATGAA
GACGACTTCA TGTCATCTTC TGACGAACAC GATGAAGAAG AAGAAGAAGA AGATGACGAA
GAAAATGAAG GCAGTGCTGA AGAAGTAGAT CAGGACGATG ACGACAGTGC TGAAGAATTA
GATGAAGTCG ATCACGAAAA TAGCGAAGAA AGCGACGAAG AAAGTGATGA AGAAAGTGAT
GAAGAAAGTG ACGAAGATAG CGACGAAGAA GAAGAAGAAG AAATTCCTCG TCTTCTACAG
AGCAAACCCA AGCATTCCAA AATCGCAGAA TCTTTTAAAG AATGGGCAGA TCAACAAGTT
CGTCAAATTG AGGGAAGGGA AAACACTTCA ATGCCGGAGG TTTCTGCTGC TGTCAAGGAA
AAATACTCTA AACCTACAGT TCACGAGGAG GATTTCGATC GTCCCGAAGA TGACGAAAAT
TATATTCCAA TCAATCAGCA ATTGCAAAGA GATGCATTTT TCGTTGAGGT CACAAGATCA
GATGAAATCC AGAAACAAAG AATGAACTTA CCAGTATTTG GAGAAGAACA CAGAATCATG
GAAGCAATTC ACCACCATGA CTGTGTAGTT ATTTGTGGTG AGACCGGGTC TGGTAAAACC
ACTCAAGTTC CTCAGTTCTT GTATGAAGCT GGTTTTGGAA ATGATGGAAG TGAATTGTAC
CCAGGTATGA TTGGTGTCAC CCAACCCAGA AGAGTTGCCG CTGTGTCCAT GGCTGAAAGA
GTAGGAAATG AATTGGGAGA CCATGGAGAA AGAGTTGGTT ACCAAATTAG ATTCGATGCT
ACTATAAAAA ACGAAGGAAA ACCAAATGGT ACTGCCCTAA AGTTCATGAC TGATGGTATC
TTGTTGAGAG AAATGATGAA AGACTTCTTG ATCACAAAGT ACTCTGCAAT CATTATCGAC
GAGGCTCACG AAAGAAACAT CAATACTGAT ATCTTGATTG GTATGTTGAG TCGTGTCTTG
AAGTTGAGAA GAAAATACAG CACTGAAAAC CCGGAGAAGT ACAAGCCTTT GAAACTCATT
ATTATGTCTG CAACATTGAG AGTATCTGAC TTTTCTGATA ATCAAACCTT GTTCAAGATT
CCTCCTCCAA TTTTGAAAGT TGATGCTAGA CAGTACCCAG TAAGTGTTCA TTTCAGCAAG
AAGACAAACT TCGACTACAT TGATGAAGCA TTCAAGAAGA CTTGTAAAAT CCACAAGAAG
TTACCACCAG GGGGGATCTT GGTTTTCTTG ACTGGACAGA ATGAAATCAC CACATTAGTG
AAGAAATTAC GCCAGCAGTT TCCATTTCAA GAAACAGGAC GTAAGAAGAA CTCAATTAAG
TACGATGAAG AACAACAGGT CAGGCTCAAC AAGGAAACTG ATGCCGAAGC TGAAGACGTT
GATTTCAGCG TCAATGTCAG AGAGCTCATG GAACAGGAAG GAGATGAAGA GGTTAGCGAC
GAAGACGAAG AAGAGGAAGA AGGCTTTGAA GAGGTTTTAG AGCCTCACCA ATCCGAGAAT
GACCCCTTAT ATGTTTTACC ACTTTACTCA TTATTACCAA CGAAGCAACA GATGAAGGTG
TTTGAGTCCC CACCTCCTGG TAGCAGAATC TGTATTGTAG CTACCAATGT AGCTGAGACA
TCTTTGACTA TACCAGGAAT ACGTTACGTG GTAGATTGTG GTCGTTCTAA AGAAAGAAAA
TACAACGAAG AAAACGGAGT GCAATCCTTT GAAATCGACT GGGTTTCTAA GGCTTCTGCA
GATCAAAGAT CTGGTAGAGC TGGTAGAACT GGACCTGGTC ATTGCTACAG GTTGTATTCG
TCTGCTGTTT TTGAATCATT CTTTGCACAG TTCAGCACTC CAGAAATTTT ACGAATGCCT
TTCGAAAGTA TTGTTCTCTC AATGAAGAGT ATGGGCATTG ACCAAATAAT TAATTTCCCA
TTCCCAACTC CTCCTGATAG AACTGCTCTT AGGAAAGCTG AAAGACTCTT GACAATCTTA
GGAGCCTTGG ATAGAGAAAC GAAACAGGTG ACTGACTTGG GAAGAACAAT GTCCCATTTC
CCTCTCAGTC CTCGATTTGC TAAAATCTTG ATTATAGGTA ACCAACTTGA CTGTCTTCCT
TACATTGTAG CTCTTGTCTC TGCCTTGTCC GTTGGAGATC CATTTCTCAC AGAGAACGAA
CTTGGAATAA ATACAAGAAG GGTCAATTCT GACGACGAGG AAGAAGAAAG GAACCAAGAT
GAGGAAGAAG AAAAGAGAAA AACAAGAGTT AAGTTCAACC AATCAAGAGC TATGTTCTCA
AAATTGGATA AAGAAAGTGA CGCTTTGATG TTGCTTTCTG CGGTTTGTGC ATTTGATCAT
GTCCCTCAAG ACAAGAAGGC TGGCTTCCTC AGGAACAACT TTTTACGTCC TAAGTTGATG
GAAGAAATCG CAAAGTTGAG AAAGCAGGTG GATTTCATAG TTAAGTCTCA TACTGCTGTT
GACTCTATTG CCAACAATAC TGGTGCTGTA GAAAAGAGTA TGAAGCTAAA AATTCCTGAT
AAGAAGCAGG TAGCAGCTAT AAAGCAGATG GTTGCAGCTG GATTCATCGA CCAAATTGCA
ATCAGAGGAG ACTTGGCATC CACCGATATC AATATACCTA ACAAGACTTC CCTCACCAAT
ATCCCTTATA TCCCCGTCTA TCCTATCAGT ACCGATGCTG AGTCGGAGCC ATACGTGTAC
ATACATCCTA ACTCCATAAT AACCGGAAGT GGTTCCATTC CAGGCTCATA CTTGGTATAC
CAAAGTTTGA ATACTGGAGC TAATATCAAA GAAGGTAAAG GTCCTAGAGT AAGAATGAAG
CCATTGGTTG GAGTCAGCGG TAAGCAATTG GCTAATCTTG CTCGGAACTC GCCACTTCTT
ACATACTCCA AACCTTTGGG CCATCCATAT GCTCCTAAGA ATATCACCCC AAACAAAAGA
GAATGCTACG TAGTTCCCAG ATTTGGGGCC GCCATCGGCT CGGGTGGTGT TGGCTGGGAC
TTGCCAGCAA TTAAGGTGAT TCAGGTGAAG CAGAATGGAG CTTGGGTGAC AGAATCATAG
CTGCACATTG AGCATCTAAA ATTAATAGCA TTTATCATAG AAACAATTTA ATATTATTG
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| Protein sequence | MGKYRKRFNE KARSGMLAKQ AALRKVRNKQ FNRPTEEAIN GDEPAAANVD PTKLFNEENS
NSEILKPMTD EEKLERKRTL EATLYAENQK ESKMSRSKRK RLDKYIDHQL KREEKKDLLE
KLSKTKIDTS ILTASKNLGR GKSTKREDMI EALELERQGR ADEWTKDVLY ETREVKEWDE
DDDKSENSEI DDQDSDADSL SEFGETTAST TSSFVDNRPA KFGGSGSGFG FANLPKIERS
TSHKKYTWRL KVEQEERKRL KLADEDDFMS SSDEHDEEEE EEDDEENEGS AEEVDQDDDD
SAEELDEVDH ENSEESDEES DEESDEESDE DSDEEEEEEI PRLLQSKPKH SKIAESFKEW
ADQQVRQIEG RENTSMPEVS AAVKEKYSKP TVHEEDFDRP EDDENYIPIN QQLQRDAFFV
EVTRSDEIQK QRMNLPVFGE EHRIMEAIHH HDCVVICGET GSGKTTQVPQ FLYEAGFGND
GSELYPGMIG VTQPRRVAAV SMAERVGNEL GDHGERVGYQ IRFDATIKNE GKPNGTALKF
MTDGILLREM MKDFLITKYS AIIIDEAHER NINTDILIGM LSRVLKLRRK YSTENPEKYK
PLKLIIMSAT LRVSDFSDNQ TLFKIPPPIL KVDARQYPVS VHFSKKTNFD YIDEAFKKTC
KIHKKLPPGG ILVFLTGQNE ITTLVKKLRQ QFPFQETGRK KNSIKYDEEQ QVRLNKETDA
EAEDVDFSVN VRELMEQEGD EEVSDEDEEE EEGFEEVLEP HQSENDPLYV LPLYSLLPTK
QQMKVFESPP PGSRICIVAT NVAETSLTIP GIRYVVDCGR SKERKYNEEN GVQSFEIDWV
SKASADQRSG RAGRTGPGHC YRLYSSAVFE SFFAQFSTPE ILRMPFESIV LSMKSMGIDQ
IINFPFPTPP DRTALRKAER LLTILGALDR ETKQVTDLGR TMSHFPLSPR FAKILIIGNQ
LDCLPYIVAL VSALSVGDPF LTENELGINT RREEEKRKTR VKFNQSRAMF SKLDKESDAL
MLLSAVCAFD HVPQDKKAGF LRNNFLRPKL MEEIAKLRKQ VDFIVKSHTA VDSIANNTGA
VEKSMKLKIP DKKQVAAIKQ MVAAGFIDQI AIRGDLASTD INIPNKTSLT NIPYIPVYPI
STDAESEPYV YIHPNSIITG SGSIPGSYLV YQSLNTGANI KEGKGPRVRM KPLVGVSGKQ
LANLARNSPL LTYSKPLGHP YAPKNITPNK RECYVVPRFG AAIGSGGVGW DLPAIKVIQV
KQNGAWVTES
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