| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_87921 |
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| Symbol | PRP43 |
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| ID | 4837500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 1148127 |
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| End bp | 1150513 |
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| Gene Length | 2387 bp |
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| Protein Length | 771 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640388815 |
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| Product | RNA helicase involved in spliceosome disassembly |
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| Protein accession | XP_001382436 |
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| Protein GI | 126131822 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.155834 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTTCGTTTCA CCATGGTTGC TGAAAGAGTA TTCAAGAAGC AGAAATTGGA TGAAGAATCC
AGGGCCGAGA TTGTGGCTGA AGAAGCGGAA GAAAAGTTAA GATTACATCC TCATCCCGTG
GCACCAGATG TTCTAGTTCA CCATGATGCT GGTGAATTCT CTGGAATGGT TAGACACAAG
ACGGATTCGC AGCAAGCTGT GAAATTGGAG ACAGCAGATA TCAATCCTTT CACGGGTGGC
AAATTCAGCA AGCAGTATTT CGACATTTTG AAGGTTAGAC GTGATTTGCC AGTACATGCT
CAGAGAGATG AGTTCTTAAG AATTTTCCAA AACACCCAGA TCATGGTGTT TGTTGGTGAA
ACTGGTTCTG GTAAGACTAC TCAGATTCCT CAGTTTGTTT TGTATGATGA CATGCCACAT
TTGGCTGGAA CACAAGTAGC CTGTACCCAA CCAAGAAGGG TCGCAGCCAT GTCTGTGGCC
AAGAGAGTAG CAGACGAAAT GGATGTTGAA CTAGGTGAAG AGGTTGGTTA CAGCATTCGT
TTTGAAAACA AGACTTCGAA CAAGACCATT TTGAAGTACA TGACTGATGG TATGTTATTA
AGAGAAGCCA TGGAAGACCA CGATTTGAAG AGGTACTCCT GTATTATTCT AGATGAAGCG
CACGAAAGAA CTTTGGCTAC TGATATCTTG ATGGGTTTAT TGAAACAAGT CAGTGTAAGG
AGACCAGACT TGAAGATCAT TATCATGTCG GCTACTTTAG ATGCTGAAAA GTTCCAGAAG
TATTTCAATG ATGCCCCATT GTTAGCAGTT CCTGGTAGAA CCCATCCAGT AGAAATCTAC
TATACCCCAG AATACCAGCG TGATTACTTA GATGCAGCTA TAAGAACAGT TTTGCAGATA
CATGCTACAG AAGATGAGGG CGATATATTG TTATTTTTGA CAGGTGAAGA AGAAATTGAA
GACGCTTGTA GAAAGATCTC TTTGGAAGGA GACGAGTTGA TCAGAGAACA AGATTGTGGC
CCTATCAAAG TTTATCCATT GTACGGTTCC TTGCCTCCAC ACCAGCAGCA GAAGATTTTC
GATCCAGCTC CCGAAAGATT GAGACCAAAT GGTAGACCTG GAAGAAAGGT AATTGTTTCA
ACCAACATTG CCGAGACCTC TTTGACTATC GATGGTATTG TATATGTGGT TGATCCAGGT
TTCTCCAAGC AGAAGGTTTA TAATCCAAGA ATCAGGGTTG AGTCATTGTT GGTATCTCCT
ATTTCCAAAG CATCTGCTCA ACAAAGAGCT GGTCGTGCTG GTCGTACCAG ACCAGGTAAG
TGTTTCAGAT TGTACACCGA AGAGGCTTTC CAAAAGGAGT TGATAGAACA GTCATATCCT
GAAATCTTGA GAAGCAACTT AGCATCCACC GTGTTGGAAT TGAAGAAATT GGGAATAGAT
GACTTAGTTC ACTTTGACTT CATGGATCCA CCGGCCCCCG AAACCATGAT GAGAGCATTG
GAAGAATTGA ACTATTTGCA ATGTTTATCC GATGAAGGAG ATTTGACCGC CGCAGGTCGT
ATGGCTTCGC AATTTCCTTT GGATCCAATG TTAGCAGTGA TGTTGATTGG ATCAGCTGCC
TTCAACTGTT CTGAAGATAT TTTGACTATT GTAGCATTGT TGTCGGTTCC AAATGTCTTT
GTCAGACCTG CAGCGGCCAG GAAGAGAGCA GATGATGCTA AGATGGCTTT TGCCCATCAA
GATGGTGACC ATGTCACTTT GCTTAATGTC TACGCTGGAT TCATTTCCGA CGAAGCTCAA
AGTATTGGAG TACACCAATG GTGTCGGGAC AACTTTTTGT CTTATAGATC ATTAACTTCT
GCCAAGAGTG TCAGAGCACA ATTGCGTCGT ATCATGGAAA GAAACGACAT AGACTTAAAC
AGCACTCCAT TTGAAGACCC TTCATGGGCC GTGAATGTCA GAAAGGCTTT GGCTGCTGGT
TTCTTCATGC AAGTGGCTAA GAAGAAGTCA GCGGGCAAGG GTTACCTTAC TATTAAGGAC
AATCAAGAAG TATTGATTCA TCCTTCGACG GTATTGGCTA CAGAAAGTGA ATGGGTTATT
TACAACGAAT TTGTGTTAAC AAGTCAGAAC TACATCAGGA CTGTTACCAC AGTCAGACCA
GAGTGGTTGG TTGAATTTGC ACCCAAGTAC TATAACTTGG ATCACTTTGG CAAGGGAGAC
GTGAAGTTGT CGTTGGAAAG AGTTATAGAT AGAGTGGAGA CCATGAAGAA ATTGGAAGAC
AAGAGTGCTA GAAAGGAGAA AAAGAAGTCG AAAAAGAGCA AAGCTTAGAG CTAGTATACA
TACATAGATA ACAGCATCTG TACCATAGAA TAAATCCATT AACCTAG
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| Protein sequence | MVAERVFKKQ KLDEESRAEI VAEEAEEKLR LHPHPVAPDV LVHHDAGEFS GMVRHKTDSQ
QAVKLETADI NPFTGGKFSK QYFDILKVRR DLPVHAQRDE FLRIFQNTQI MVFVGETGSG
KTTQIPQFVL YDDMPHLAGT QVACTQPRRV AAMSVAKRVA DEMDVELGEE VGYSIRFENK
TSNKTILKYM TDGMLLREAM EDHDLKRYSC IILDEAHERT LATDILMGLL KQVSVRRPDL
KIIIMSATLD AEKFQKYFND APLLAVPGRT HPVEIYYTPE YQRDYLDAAI RTVLQIHATE
DEGDILLFLT GEEEIEDACR KISLEGDELI REQDCGPIKV YPLYGSLPPH QQQKIFDPAP
ERLRPNGRPG RKVIVSTNIA ETSLTIDGIV YVVDPGFSKQ KVYNPRIRVE SLLVSPISKA
SAQQRAGRAG RTRPGKCFRL YTEEAFQKEL IEQSYPEILR SNLASTVLEL KKLGIDDLVH
FDFMDPPAPE TMMRALEELN YLQCLSDEGD LTAAGRMASQ FPLDPMLAVM LIGSAAFNCS
EDILTIVALL SVPNVFVRPA AARKRADDAK MAFAHQDGDH VTLLNVYAGF ISDEAQSIGV
HQWCRDNFLS YRSLTSAKSV RAQLRRIMER NDIDLNSTPF EDPSWAVNVR KALAAGFFMQ
VAKKKSAGKG YLTIKDNQEV LIHPSTVLAT ESEWVIYNEF VLTSQNYIRT VTTVRPEWLV
EFAPKYYNLD HFGKGDVKLS LERVIDRVET MKKLEDKSAR KEKKKSKKSK A
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