| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_87539 |
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| Symbol | PRP5 |
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| ID | 4837624 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2193221 |
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| End bp | 2196041 |
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| Gene Length | 2821 bp |
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| Protein Length | 875 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388939 |
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| Product | pre-mRNA processing RNA-helicase |
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| Protein accession | XP_001382645 |
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| Protein GI | 150863984 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.223181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAATA CAGTTACTAA CGATTCAGAT GAATCCAAGT TATCCAAAGA AGAGAAGTTG
AAGAAAAGAC GCGAGCAGCT TGCGCTTTGG CGGCAAAAAA AGGAACAAGA TCTGAAGAAT
GGAGAAAAAG AAATGAATTC AAATGCAACA ACATCGTCAG ACGATAAACA GAAACTCAGG
CAACAACGTA TGGAAGAATG GAAGAAGAAA CGAGCACAGG AGACTAAGAT AGATTCGAAG
GAATCTGTAA AAGAGTCACC GAAACAAGAG AACTCAATCG TAGACGATAA GCTCAAACAG
AGACAACAGA GAATTGAAGA GTGGAAGAAG AAACGAGCAC AAGAATCAAA TGCAACTAAT
TCAGTTTCAC CGTCAGTTAC AGAAGTAAAA GTTCAAAAGC CAGCTTTTCA GTTAAAAAGA
TTGGCCTCTA GCATCAAGAA GCAGGAGCTT CCATTTACAA AGAAAAGAAT ACTATTCGAT
GAAGAAGAGG AAGACGAATC GAAGAGAAAA CCTAAATTCA AGAAGCCAAC TTTAGATGGT
CATACTGAAG ATTTGCAGCA CAGAGAAGAT GACCCCAATG GAAAAATAGA CGAACTTGAT
GATTTTATAG CTTCCCTTTC AAAACAGGAG TCTAGCTCCA ACGACATACC TTCTCAAATA
ATTGAAGATG AACAGTTAGA AGTGGAAAAT GAAGGTGACT CTGAAGATGA AGAAATAGAC
CAAGACAAGA AACAGCAGGA ATTACTCTCT TCCAAGTTCC AGAAACTTCA GAATGAGAAA
CAGTTAGAAA CTATAGACCA TTCTACTATG AACTACTCTG ACTTTAGAAA GAATTTCTAT
CAAGAACCAA GTGAGATTCA AAATTGGACA GCTGAACAAG TGGAAAGTAT CAGACTAGAA
TTGGATGGGA TAAAGGTGGC TGGTTCAAAT GTTCCTAGAC CGGTTTTGAA ATGGTCTCAT
CTAGGATTGC CTGCTTCATA TATGAATATC ATTGAAGACA AACTTGAGTA CAAGGCTCCT
ACCTCAATTC AATCTCAGGC TCTTCCTGCT ATTATGTCTG GAAGAGACAT TATTGGTGTA
GCCAAAACTG GCTCGGGCAA GACGTTATCT TTTGTACTTC CAATGTTAAG GCATATCCAG
GATCAACCTG ATTTAAAAGA TGGTGAGGGT CCTATTGGTT TAATATTGTC TCCTACCAGA
GAGCTAGCAG TTCAGATTCA TAAGGAGATC ACTAATTTCA CGAAGAGATT GGGAATGACA
GCTTGCTGTT GTTATGGAGG ATCTCCTATT GAATCACAAA TTGCGGAGCT AAAGAAAGGG
GCACAAATAT TGGTAGGAAC ACCAGGTAGA ATCATAGAAT TACTAGCTGC TAATAGTGGC
AGGATAACAA ACTTACGAAG AGTAACATAC GTTGTATTGG ACGAAGCTGA CAGAATGTTC
GACTTGGGAT TTGAACCTCA AGTGACAAAG ATATCGTCAC AGATTCGGCC TGAGAGTCAA
ACAGTTCTTT TCTCAGCTAC GTTTCCCAGA AAAATCGAAT TGCTAGCCAA ACGATTACTC
TATAATCCGT TAGAAATTAT TGTGGGAGGT ATTAGTGTCG TGGCATCTGA GATCACTCAG
AAAGTGGAGC TATTTGAGAA GGGCGAGAGT AGCCAGCTAG AAGATGAGAA GTTTGACAGA
CTACTCAATA TTTTGAATGT TTTCTCGATA GAGTCCAAAC ACAGCAAAGT ATTGATTTTT
GTCGAAAAAC AGTCTGCTGC CGACGATTTG CTAGTCAAGT TGTTAGGAAG CAACCACCCA
TGCCTAACAA TACATGGAGG TAAGGATCAA ATTGATAGAA AGTATGCTAT TAAAGAATTT
TCATCCAAAG ATAGCGGTGT AGATATTTTG ATCGCAACCT CCATTGCAGC CAGAGGTCTT
GATGTCAAAG GGTTAGATCT TGTAATCAAT TACGATCCAC CTAATCACAT GGAAGATTAC
GTTCATCGTG TTGGTAGAAC TGGTAGAGCA GGTATGAAAG GTACAGCTAT AACCTTTGTT
TCTTCAGATC AAGAAAGACT GGTTACAGAT CTAGTCAGGG CCATGACGAT GAGTAAGATC
CCTGAGGATG AGATTCCCAG CAGATTAATA GAGATAAGGA ACCAATTCTT AGAAAAAGTT
AAGGCTGGTA AATTTAAATA TAGTTTTGGA TTCGGTGGCA AGGGTTTGGA AAAATTACAG
CAAATCAGAG ACTCTACTAG AAGCTTACAA AAGAAAGAAT ATGGGCCAAA TGACGACGAT
GATGTCAATT TTGTTGCGGA CAAAACCAAC GGTACTGCTA AAAAAGATGG AGCTACTTCT
TTACCGGCTC TGGAGGTCGC CGTGGATTTG CCTGACTTCC AGGTTATTGA AGGACGAGCA
CCAGAAACTT CTGGTCCAGA CAAGAGTAAA TTCCATTCCA GAATCACCAT CAACGACTTA
CCACAAAGAG CTCGTTGGTT TGTGGTCAAT CGTGATAGCT TGTCGAAGAT AATTGAGTCT
ACATCGACAT CGATAACAAA CAAAGGTCAA TACTATGCAC CCAACGTCAA GGTTCCACAG
ACCGTTACGG TCAATGGAAA GGAAAGTCCA GCTCCACCAA GGTTGTACTT GCTTGTAGAA
GGGTTAACAG AGCAATCCGT TCGCGAAGCT AACTCATTGA TTAGAGACAA AATGATAGAA
GGATTGGAGG TAGCTTCTAA GGAACTGAAT ATGGCACCAA CGGGTAAGTA CAAAGTATAG
AAGTTATAGA GTATTGAAGC TGGATATGAT AGAATAGAAC ATAGGAAATT AGACTGATAG
G
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| Protein sequence | MDNTVTNDSD ESKLSKEEKL KKRREQLALW RQKKEQDSKN GEKEMNSNAT TSSDDKQKLR
QQRMEEWKKK RAQETKIDSK ESVKESPKQE NSILKRLASS IKKQELPFTK KRILFDEEEE
DESKRKPKFK KPTLDGHTED LQHREDDPNG KIDELDDFIA SLSKQESSSN DIPSQIIEDE
QLEVENEGDS EDEEIDQDKK QQELLSSKFQ KLQNEKQLET IDHSTMNYSD FRKNFYQEPS
EIQNWTAEQV ESIRLELDGI KVAGSNVPRP VLKWSHLGLP ASYMNIIEDK LEYKAPTSIQ
SQALPAIMSG RDIIGVAKTG SGKTLSFVLP MLRHIQDQPD LKDGEGPIGL ILSPTRELAV
QIHKEITNFT KRLGMTACCC YGGSPIESQI AELKKGAQIL VGTPGRIIEL LAANSGRITN
LRRVTYVVLD EADRMFDLGF EPQVTKISSQ IRPESQTVLF SATFPRKIEL LAKRLLYNPL
EIIVGGISVV ASEITQKVEL FEKGESSQLE DEKFDRLLNI LNVFSIESKH SKVLIFVEKQ
SAADDLLVKL LGSNHPCLTI HGGKDQIDRK YAIKEFSSKD SGVDILIATS IAARGLDVKG
LDLVINYDPP NHMEDYVHRV GRTGRAGMKG TAITFVSSDQ ERSVTDLVRA MTMSKIPEDE
IPSRLIEIRN QFLEKVKAGK FKYSFGFGGK GLEKLQQIRD STRSLQKKEY GPNDDDDVNF
VADKTNGTAK KDGATSLPAS EVAVDLPDFQ VIEGRAPETS GPDKSKFHSR ITINDLPQRA
RWFVVNRDSL SKIIESTSTS ITNKGQYYAP NVKVPQTVTV NGKESPAPPR LYLLVEGLTE
QSVREANSLI RDKMIEGLEV ASKESNMAPT GKYKV
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