Gene PICST_87327 details

Gene Information

• Locus tag: PICST_87327
• Symbol: QDR21
• ID: 4837532
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Scheffersomyces stipitis CBS 6054
• Kingdom: Eukaryota
• Replicon accession: NC_009042
• Strand: +
• Start bp: 2619045
• End bp: 2625274
• Gene Length: 6230 bp
• Protein Length: 554 aa
• Translation table: 12
• GC content: 41%
• IMG OID: 640388847
• Product: multidrug resistance transporter
• Protein accession: XP_001382734
• Protein GI: 126132418
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

AAGGCAGCAG CAAGAGTCGT GGCGGTGATA TACGAGATAT ACACCTATCC AGATCCAGAA 
GAAGATGCAG ACAATGACGA AGAATACAAC ACCGATGCTC CGTACTACGA GCAAGGTGCC 
TTATTTTCCA TTCTCGAGAG ATTGGCCAAT ATTTCCACAA AAAAGGTTTC TAAAAAGGAT 
AAAAAACAAG TCCATTCTGT TTTCAGAAAT ATACTAAGCA CTTTGCAAAC ATACGTTGAT 
CCAGTGAAGA GAACTCATGT ATACAAGAAA ACAACCCAGG GGGTGGAAAT CATAAACTCC 
ATTATGAACT CGACCTATAT TAGGTTATCG AAGTACAAGT CATTACCAAT CAACAGTTGG 
GTTCTTTACA TAAGGTTGAG AATATTGAAA TGGTGTTTCA GTTTCGGTTT ACATGATCAG 
TTGGTCAGTA ATGAGAGTAT CAGGGATATC TTGAAGGAGC CAGAATCCGA ATTCGGCTCC 
AACAATAATG GTTTTGAAAT CGATGAAGAA TTGTTGGACA AAGAAGGATA CTCTGAATTT 
GTCAACGACT ACATGGACTA CAAGCATTCT TTGGACGAGA AAAAGAGAAG CGAAAAGATC 
AAGAAGCAAA GACAAGAAAA GCTCGAGGAT CAATTTGAAG AATTGAATGT TAAGTAGATA 
GGTTTACTCT AATATTTTAG TATGGTATCT ATAAATATAT CTTCTTGAGG TTACAAGGTT 
TCCAACTTGA GTGTAATATC AGCACCTGAC GTAGACTCCA AAGTCACCTT GGTCATGTCT 
TCTACCACAT ACTTGGCACC AGCATCCAAG AGCTTTTGCT TGTCAAAAGT TGTAGCAATT 
CCGATAACAA TGAAGCCAGC ATTGATACCA CTGGCAATAC CAACAGGCGC ATCTTCAAAT 
ACAATAGCTG CACTCTTGTC TTCTATTTTG TGGATCGAGG ATATCTTTTC AAAAGCTGTA 
GTATAGCCTT CTGGGTTTGG TTTTCCAAGT GTGACATCAT TGGCCGTGAT GAACACTGAA 
GGCTTATCAA TATGACTAAA CAATCTTTCG AACCAACCAT GAGCCAAAGG ACGAGTACCA 
GAGGTTACTA CAGCCCAACG GTCTCTGAAT TCTGACTTGT TAAGCGAATC AAGAAGCTCT 
GGTGCGCCAT GAATAGGTCT TCCTAACTTT CCGAAATGGC TCACTATACC TTGTTCCCAG 
TTATTTATAG TATCTTCGTC CGACGGTTTG TAGGGAAAGT ACTTCTTGAA AACATCTACA 
GTTCTGGTAC CGTGACAACT ATGTACAAAC TCTAGTGGTT CGTAGTATTG GTCTGGGTGA 
GCCTTGTTGT GCTCTTGAAC TTCGTTCAAC CAGCTCTTTT CCACGGCTGG AATCGAGTAA 
ACTAGAGTGC CGTCCAAGTC AAATAAAAGT GCCTTTGTCG AAATAGTCAC ACTCATGGCG 
ATGTCAGAAT TACAATTTCT ACGTATTTGC TTAGGAACGG ACAAGTTATA GATTTTCACC 
GTTGGCCTTG GATTGTGTCA ACTGATGCAC TGTAGTGTAT TCACCAGTTG CAAAATGCTT 
GGTATCTTTA AAGTCTGGAG AAGACGGACA AATGATGGGG ATACAGAAAT GAAGTGGTCT 
ATATATTCTT CGGACTTCGA ACCATTCGTC TTAGAAAGTA TTGTACTACA TGATTTGTCA 
GACTATATAA ATTGTCTATA AATAGGTCCC CGTTTGAACA CTGATTATTC ATTTTCACCG 
ATTTTGCTGC CGAACATTCG TAAAAAGCTT CCACGCATTA GTCTAAGCGT GCCTAAGCGT 
ACGTGGCCAT GAAGTACAGA AGATAATCAG GTTGTTGATG TATTGATGTG ATCAATACAC 
CGATTCCAAG TTTATAGATC TTAGAAATGG ACGCTCAATT ATCCGAATGA GACTACGCTT 
CTACAAGTAA AGGTTGGAAC ACGGCTCTCG TAAAGTGACC CTATCACAGA CAACTGTAAG 
CCTTCCTCCA TTGTCTATTC ATGGAGTCGC CTCAATATTT ATATCCTTCT AAACTCCATA 
AACGGAAATT TCAACCGCGC CTCTTGGTAG ACTAGCCAAA AGTCTGAAGC TTTGCGTGAA 
TCACCGGTGC GGTCTGGAAT AATCTACTTC CAAAAAAACT TGTTCTTTTT TCAAACTACT 
TGGATCGTCT TGGTCACCAG AAGGCACGGA TGAAGGTAGT CTATCAGGAA AGAGCATAAG 
ATTTGCCGTT ATCTACGCGG AGTTTGCTTG AGTTTTAGGC TTTCCTGCCT CCACGGCTGA 
GCAAAGACAA TCAAACACCT CCTGCAGATA TCGGGTTCGT AATTTCAATC TTTTTCAGAC 
AGATTCATAA AAGAAACTAT ATGAATCATA AATCTAGTAA TCCTTATGTG TTCTTGTTGA 
CAATCTTGTT AAGTTGTCTA GGTTTATTTC TGGTCGATAT TTCTGTCTGC TTATTTGTGT 
CCTGCTTTCC CTGGTTCGTC CACAATCACA TATACTCATT CATTTGTTGC ACCCTACGAG 
TGAATTTTTG ACAACTATAG ATAACTTCAG ATAACATGCC TTCTACAAAA GCACTGGTTA 
GGCCCAAACA GAAAAGATCT AGAAACGGCT GCCTCAGTTG CAAACAATTA AGAATCAAAG 
TACGTATATT TATTATATCT ATTCATCCAT CTATTCCACA GCTAAGTACT AACTATATTC 
AGTGTGACGA AAGCAAACCC AACTGTGAAT ACTGTTTGCA CACCAACCGT GTCTGCGTAT 
ACCCTGATAC AGTTCACTAC GATAAAATTA TTTCAAAGTC GCAGTCGTCC CTGCTGGATT 
CTCCTCTGCT GGAAGAAGAT ATCCTTGAAC TTCTCCAAAA TGTAGACTAC TCCCAGGAAA 
AGTACTTGAA GTTGCGAGCT TATAGACGTA ACCCAATGTA TTCGGGTTCA TTCAGGTTCG 
ATCAGATCGC ATCGCTTAAT GAGTTGACAT CTAAATTGAA TATTTCAACC TTCGAGCTCC 
GTCTCTTGAA TTACTTTGAC CGTCACTGTA TATACATGTT TTCTTTTGGG GTCAATGACG 
AAGTGCACAA TGTCTGGAAG AACCATGTAC CATCAATATT CTTGCAGAGC AAGTTAGTTC 
GAGACAGTGT CTTTTCATTT TCAGCTATCA ACATGTTCCC CCATTGTGAC TTGGAACTCT 
TGAAGTACGA TGACGACATG TATGGACGTA TCAAGCTCGA TAGAGCAAAC AAAACTGTAA 
CGTATGATCC GAATGCGGTG AGGACCAAAA TTTCACCAGA TGACGAGGAT ACACTTTATG 
ATAGGACAGC TAAGTACTTT ATGGATTCCA TCAACAAGAC CAATATTACC ATTGGTTCTG 
GAAACATACA GGGGCCGTCG ATTCCTGTAT TTCGTGACGA TTTGACCGCA AAAGAGCTAG 
TGGTTTCGGG CATCTTAATT TTTTCATTCT TAGCAATTCA TCCACACAAG CTATTGCCTT 
TGGTTAGTTT CGCTGAAGAC GAGACAGATT TTCTTTCAAT GTGCTTGGGA ATTAGTGCTA 
CTATGATATC TTGCCAGGCT GCAATATTGC GGTCCGAGTT ACTGGGAATG TTTATTCATG 
AAGAAAGAGG ACTCGAAACT CCATCACTAA AAGATTGTAC ATATCCTCTT CTTATGAAAT 
TGAAACAGGA TCTAGATCAG ATTTATGGCG GTGACGAATT CGATTCCATA GTTGCGACTG 
AGTACAACAT ACTCAGTTCT ACCCTTCAAA TATTGCACAC CGGTCTTTAC CGATCTGTTA 
AATTGAACTA CCCGATACCG TTGTTCAAGT GGACCTTGAT GATTTCACCG AACTTTCGTG 
ATTTGGTATA CGAGAAGAAC TTCTTTGCAT TGCGAATTCT TTATGTCTAC TCGAGTTTAT 
GTATGATCAC ACGATTCATG ATTTACAATG ATTCAAATAT GTGGTTAGAT TATATACACT 
GGTACAAGGA CTACAATTTG GAGAATTTCG GCAACAAGTG GGTGTATCCC ATGGATGAGA 
AGTCCTATGA ACTTACTGCA GTTAAGAAGT ATATGTTCGA GGGATTGGAC TATACGGCTC 
TTGCCACATT TGATCCAGAT GTTATGTAAG GGCACTGCTT GGTGATCTTT GCTACTCTTG 
TGATAACGAA ATAACGAACG GAGGGGGATG TTTTATTTTC ATGTTTGAAC GGTACGGTAA 
ATATTTATGA ATGGACGAAT AATCAAATTT ATGAAAAAAG TACTTTTTTT AGAACTCTCA 
CAATGCCCAC GCTTTAGTGT AGCTTGAGGC ATTCGTATAT TTTCAATCGA GTCCCACATG 
TCAATACAAA AGCTTCCAAA AGGGTATGGA CGTGGTATTA TAGCTCGGTG ATAGACTTTG 
GTAAGGTTGC AAAAACGTTA TGTGTCTATC TTCCCCATAC CTGCACTACG GGTTTATGGC 
TCGATTAGTA CATAAATGCG AAATTCTTGG CACTTCCGAG GTGTCGGAAT TCGGACCCTT 
AACTAAAACC GAGATTGATA GATATATTGA AAAAAAAGGA AAGGTCTCGT CTGCTTTGTC 
TCTAACCATA TATAAATCCT TCTACGTGCC GTTCTTTTGC CTATTCAGAC TCTGAAATAT 
GCTTCATTGG TCTGTGAATA CTTGTAACAA ACATGAACAA TAACAACTTT GATTCCAGTG 
CTGCTATACA ACAGACTGGA GAAGCTCATG GAAAGACACA CACTTATCCC GAAGCTGAAG 
TTGAAGAACC TGCGAGCATC GATATTCGAG AAAAGAAAGA CAAGATGGAC GACAACAGTG 
AGAGCAGCCA CATAGATCCC CAGTACTCGA TCCTTAAGCC CAACGAGAAG CGTTGTATGG 
TATTTCTCTT GAGTTGTTCA GGAATCTGGT CTACTCTTTC TAGTTCCATT TACTTTCCAG 
CATTACCAGC ATTATCTGAG AAGTTCTCAG TTTCTCCAGG TATTGTGAAT TTATCGGTGG 
TTGCCTACTT GCTTTTCCAG GGATTTTGTC CTACTCTATT GGCTACTGTT GCAGATACCT 
ACGGAAGACG GCCATGTATT CTTATGTGTT TAACTTGTTA CGCGGCCGTA TGCGTGGCTC 
TTTCGCGAGT TAACGTATAT TGGCTTCTTG CTGTTTTAAG ATGTTTACAG GCTGGGGCAA 
TAGCTCCAAT TATAGCTGTA GGCTCTGGGG TTATGGGAGA TATCTGTACA CCTGCTGAAC 
GAGGAGGTTA CATCGGTATG ATGGGAGGTT TTCTATTGGT GGGCCAAGGG TTTGGAGGTT 
TAGTTGGTGC TGCTGTAGTT TCTGGTTTCG GTTGGAGAGG TGTGTTTGTA TTGCTTGCAA 
TAGGAAGCGG ATTCGCCTTG ATATTGTGCT TTTTAGTTCT ACCAGAAACA AGTAGAAATA 
TTGTCGGTAA CCTCTCAGTT CCTCCTCCTC GTTTTGTCAA TGCTTCACCA ATCACACATG 
CCCCATTCTT GAAGAAGAGA ATGACAAACG ATATCTCAAC TATTGCTGAG ACAAAAAAGA 
GTAATATTTT TGCCTCATAC AAAATCTTCT TTCAAAAAAG AGTATTCTTT ACTCTTCTTC 
CGTCAGGTCT ACAATTTGCA ACTTGGACTA TGTCGCTTAC GACTCTATCT ACGTCCTTAG 
AAGTTAAATA TGGATTTTCA ACAATACAGG TTGGCCTCTG TTACTTAGCT CCAGGTCTAG 
GTACATTGAT TGGATCCATA GCAACTGGCA AAGTCTTGGA TTATATCTAT TCTAGAAAGA 
TAGCGGCTTT CAACAAAAAG TATGGACACC TTCCACCAGA AAGCAGACCA GCTTTCGATA 
TCTTCACCAG CAGAATTCAG TTTACTGTCT ATCCATCGAT CGTGTTGACA ATGTTTTCAG 
TAGTCTTTGG CTGGTGTATC CAGGAAAAGG TCAATCTTGC GCCAGTCTTA ATAGCCGCTT 
TCATCATGTC ATTTTGTGCT GTTTCGTTTA TGTCCGCACT CAACACCCTT TTGGTGGATA 
TGTTCCCGGG ACAAGGCTCC GCAGCTACTA GTTGCTTGAA CTTGATGAGA TGTTTATTAG 
GAGCAGCTGG TGTCGGTGCC CTTCAAAGCA TGGTTGATAG GATGGGAGAA GGAGGAACAT 
ATACTCTAAT GGCCGGATTT TGTGCCATAA GTGCAACCTT ACTTTTCTAC TTAGCAGCAA 
GAGGTCGCAA GAGGAGAGAG GCAGAAGAGG AAGCCAAACT ACAACAATAA 

 

Protein sequence

MNSTYIRLSK YKSLPINSWV LYIRLRILKW CFSFGLHDQL VSNESIRDIL KEPESEFGSN 
NNGFEIDEEL LDKEGYSEFS SHIDPQYSIL KPNEKRCMVF LLSCSGIWST LSSSIYFPAL 
PALSEKFSVS PGIVNLSVVA YLLFQGFCPT LLATVADTYG RRPCILMCLT CYAAVCVALS 
RVNVYWLLAV LRCLQAGAIA PIIAVGSGVM GDICTPAERG GYIGMMGGFL LVGQGFGGLV 
GAAVVSGFGW RGVFVLLAIG SGFALILCFL VLPETSRNIV GNLSVPPPRF VNASPITHAP 
FLKKRMTNDI STIAETKKSN IFASYKIFFQ KRVFFTLLPS GLQFATWTMS LTTLSTSLEV 
KYGFSTIQVG LCYLAPGLGT LIGSIATGKV LDYIYSRKIA AFNKKYGHLP PESRPAFDIF 
TSRIQFTVYP SIVLTMFSVV FGWCIQEKVN LAPVLIAAFI MSFCAVSFMS ALNTLLVDMF 
PGQGSAATSC LNLMRCLLGA AGVGALQSMV DRMGEGGTYT LMAGFCAISA TLLFYLAARG 
RKRREAEEEA KLQQ