Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_87235 |
Symbol | TFP3 |
ID | 4836975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | + |
Start bp | 1453980 |
End bp | 1454694 |
Gene Length | 715 bp |
Protein Length | 163 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640388290 |
Product | vacuolar ATPase V0 domain subunit c' (17 kDa) |
Protein accession | XP_001382501 |
Protein GI | 126131952 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01100] vacuolar ATP synthase 16 kDa proteolipid subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.291766 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGGAA TAACAGGAGA CGCATATGCG CCTGCGTTTG CGCCCTTCCT AGGATTTGCC GGATGCGCTG CTGCCATGGT TTTGTCATGT GCTGGAGCTG CCATCGGAAC AGCCAAGTCA GGAGTCGGGA TCGCTGGTAT CGGGACGTTC AAGCCAGAAT TGATCATGAA GTCGTTGATT CCCGTTGTCA TGTCGGGTAT CTTGTCTGTT TACGGATTGG TAGTAGCAGT ATTGATCGCT GGAGGTTTGG CTCCCACAGA GACATATTCT CTTTTCAATG GCATTATGCA CTTGGCCTGT GGATTATCAG TAGGATTTGC TTGTTTATCG TCGGGATATG CCATTGGTAT AGTCGGAGAC GAGGGTGTGA GACAGTTTAT GCACCAGCCC AAGTTATTTG TTGGAATCGT GTTGATTTTG ATTTTCGCCG AAGTCTTGGG ATTGTACGGC ATGATCATCG CCTTGATCTT GAACACTAAG GGAAGTGGTT AGAGGAAAAG AGAAACAAGT TCATGATATA TTCCGATATC AGTTTGTATT GTCATTTCTT ATTAACTTAC TTGAATTGTA TGTATCATGT CTGATTTCCC ATCCTACCTC AATTATCATA TTTTGAATAC ACTTTACTTC ATTATATCTA CGATGTCACT ACATCGCTGA TCGCTACTTC TAGTACTTAT ATATATTTTC AATAAAATAC TTCGTCACGT ACTGT
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Protein sequence | MSGITGDAYA PAFAPFLGFA GCAAAMVLSC AGAAIGTAKS GVGIAGIGTF KPELIMKSLI PVVMSGILSV YGLVVAVLIA GGLAPTETYS LFNGIMHLAC GLSVGFACLS SGYAIGIVGD EGVRQFMHQP KLFVGIVLIL IFAEVLGLYG MIIALILNTK GSG
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