| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_82348 |
|---|
| Symbol | RAD15 |
|---|
| ID | 4837473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 1103092 |
|---|
| End bp | 1108229 |
|---|
| Gene Length | 5138 bp |
|---|
| Protein Length | 1343 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640388788 |
|---|
| Product | DNA-dependent ATPase of the nucleotide excision repair factor 4 complex |
|---|
| Protein accession | XP_001382433 |
|---|
| Protein GI | 150863827 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.968646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCT CACATCATAG CAAGAAATCT GCACTTCAAC ACGTGGTTGA AATCACCAAT
GACATTGAAA AATTGGTTTC TGTTGGGACA TTGTCATTTT TCAATGTGCC TCTAGAGATT
TCTGATCTAG GAGGATTAAC AGTAGAGTCT GGAAAACATA GTCAAGATAG CAATAATGAC
ACAAACAGCT GTGATAATCG ATTTTCCAGT TGGAAATGGT TGGATATCAG CTTCTTTCTC
TATTTGTGTC TGTGTCGTGG AATTGGTTTG AATCCACTTA TCCATGGATT GCATTTTCTT
ATAATGCATC GATTTGCAAT GGCTACCTTC AATACATACA AAGTTAAGAT AAGAAATGGA
TACATGACAA TATTCAAGGT ACGTCTATAT TGTGTACCGG CGGACGTAAG AGGTTTCCGC
TACATTCATG AATGGAGAAA CAGCAAGCCT CGAGTTCATC TCAATGAAAA GAACTACAAG
AAGTACTGGA GCACACTTCT ACAGTATCTC GATTATTCTG TAGCCGGATG GCATATTCCC
CAGTACGAAG TTGGAATTGG ACAATTTGTC AAACAGAATC TGATCTTGAT AGATATGAAA
GCCAATGCAA GTTCAAATGT GGACTTAACT TCCGTAGAAA CTCTTAACTA TCATATTCAT
AGATGGACTT CCAACAACAA ATGCGAGCCA TTTCGAGCAA CATCCAATGT TACACATAAA
AGCAAAACAC TAGCAGATCG AATTCAAGAT ATTTACAACG GTATATCATC TCCAGATGTT
AGTGTCTACC AGAAGAAATC AGTAGAAGAA AGGGGAACTA CGCCAAATTC AAAAGAAGTA
CTAGTACAAC TCCTCAATAG TAGAAATACA GGCGACCTGC AAATTGATGG TGTCAAAACA
GAACTCTATA CATTTCAAAT CCGTTCGATA GCCAAGATGT ATGAAAAGGA AGTGTTTCCG
CAAAAAGCAC TTTCCCCTAA CTTTGTAGAG TTGAGGTCTC CTTCAAATGG TTTTAAGTTC
TACTTTCATT TGCAAAGCTA CTTTGTCCAC ATTGAACCAG AAATATACCT GTTGCCTAGA
GGAGGAATAT TGGCAGAGAA TATGGGTCTC GGAAAAACTC TCATATGTCT TAGTCTTATT
TGCTTAACGA AGAATGACAT TTCTCAAATT CCAAATGATC TATTGATTCA TGACCCTATG
GAAGAACCAG AATTGCAAGA GTTAATACTA GATGAAAATG ACATCTTGAG GCCGATCAAT
GCTCCACGTC CACAGCAAGT CAAATCTTTG AGCGAACTTT GTAAACAATG TGTGAATCAA
AACTCCTTGC CTTGGCGATA TTATGCTAGT GATCTTCCTC AATCTGTTGT TCAAGCCCTT
CTAAAAGATC CTGGTTATTT TCAGATACCA TTGGTTAATA AAGAGTACGA ATCGCAATTT
TCTCAAAGAC TGAGAAAACC TTCTACAAGA CAGAGTCTGA AAATCGAAGA AGGATACAGT
TTCAGGACTT TGTTCTTATG CAATACTACA TTGATTATCG TACCAGACAA CTTGTTCCAC
CAGTGGAATA CAGAATTGAA TAAGCACATT CAGCCCGGGT TTCTTCTGAA GTTATTTATT
TCAAGTCAAT TTCGCAAAGA GATTATCACA TCAAGAGGAA CATATACCAA TGTTAGTCTG
AAAGATCCAC GAGATCTCAT CAAATATGAT TTGGTAATTA TGACACATTC ATATCTTGCT
AGACAGTTTG GTGAGTTGCT GCTGGAAGAA AATCCCCTTA ACAAAATCTA CTGGAAAAGA
TTAATCATAG ATGAAGGACA TAGCATGAAT TCTAAGTCTT CCAAGACCAG CAATCTCTGT
AAAGTAATGC AAGCCGAACG ACGTTGGGCA GTTACTGGTA CGCCAACATC AGGATTGACC
AAGTTGTATA TGGATGAAGA GCAGAATGAG ACAGATTCGG CGACAGCCAG TCCAAAGAAG
AAGAGTAAAT ATGTTGTGAA ATCGCTGTTC AATGAAAAAG AGGATTTGGT GAAACTTGGA
ACTATAGTTG GAAATTTTCT CAAGATTGAA CCTTTTCATT CACGTCCCAA GCTATGGACA
AAAGAGGTTA TTCAACCATT AGTGTCAAAA GTCTATGGAT CAGACGTAAG TTTATCTAAT
CTACTCAATG CTATTGTCGT GAGACATAAT TCTCAGGACA TCGAAAGTGA CTTGAAACTT
CCACAGTTGC ACCATGAAGC TGTCTATATT GAGCCATCCT ATCATAACAA GATTTCCATC
AACTTATTCA CTGCTGTGCT CGCTGTGAAT GCGGTTTCTT CAGAAAGAAC AGATATCGAC
TACATGTTCC ATCCGTCTAA TAGACAACAG CTTAGACGTT TGATAACGAA TTTGCAGAGA
GCTACGTTTC ACTGGACAGG ATTTCAGCAG GACGATGTAG AAACTCTCAT TCACATTTGT
AATGTATCTT TAAAGAAAAG AAGGGCTAAT GGTCAGTCGG TATATGACAA CTATGACGTG
GAATTACTCA TGAAATCTCT AGAAGCGGCC AAGTTTGCGT TGAGTAATAC AAGGTGGAGA
ACATCTGCGT TGTTGCATGA AATGAATTAC TTTGTGACGG GATTGCCAGA TGCTTTTATC
AAGTCATTTG GAACTGGAAT GGTAGAAAGA ATAATTGAAG GTGAACATGA TGACATTGGA
GTATTTGGAG CACCGCATTT GAATGCCATT CAGGAGTTCT ACTATAAGAA TCGATTCTTG
GTCATGGAAG ATGAAGAATT GTTGAAACTG AAGCTTGAAT TTGCGTCGAA GCCGTTCTGG
GCGTCTTACT GGATAGACAG CGTTCGAAGA AATAATGAAA GGTTCAAAAA ACAGGATCAG
AACCAAAATT TTGAATCTAA TGTTAAGAAT GGGGCTATAG CGAATGCTAT AAATGTTCCA
GATGTTGTCA GAGACTATAC ACCCGAATAT GTAATGGAGA CAGCCAAATT TTCAACACCT
CGAAGGAATT CTGTATCAAA GAAATCACAG ATCAGTCCAA AGAATGAACT AACCGAAGAT
GGTTTGAGCG GATTGGTAAT CACCAAAGAA GTCCACTCAG GCTTTTCTAT TAGAAACGAA
AATATCAGGG CCTCTATCAG AGAAGCTCGG ATTTTAGGGA CTGCTTCAGC TAAGTTGTCA
TATTTGGGAA GTAGACTCTT GGAGCATCAA AGAAATAAAA TAAAGTCGTT GATCTTCTTT
GAATTCGAAG ACAGTGCTTA TTACTTGACA GAATTGCTTG ATGTTTTGGG AGTCAACTAC
ATTCTTTATG CTACGTTTAT CAATCCGGCC GAGAGAGCAA GAAACTTGTC TCTTTTTAGT
GAATATATTA CAGATGAGCA AGGTGGTATT ACTTTAATCA TGGATCTCCG TTTAGCAGCC
CATGGGTTAA CTATCGTAGA AGCTACACAC GTCTATTTTA TGAGTCCAGT TTGGCAAAGA
TCCATAGAAG CTCAAGCTAT CAAAAGGGCA CATAGAATTG GGCAAACTAA AGATGTCCAT
GTTGAGACTT TGGTTCTTCG AGGAACTTTG GAAGAGGAAA TTTATAAGAG AAGAACAAGC
AATACAGATG ACAACGAAGA AGATGAAGGT TCAAAAAGAA AATATGTCAT TGACGATACT
GGAATGCAAG AGTACATTTT GAGACATAGG TTCCTAGACT ATAGCATTAC GGAGACTGAA
TATGCTCCTT TTGTTTCGCC TACTACTATG CATACTAATA ATGACGTCGA GGAAGAGGAT
CTGGAATTCT CACTACTCAA CCATAGAGGT CTTGTTGTTG AAACCAATAG ACATGGTTTC
CTACATAACT GGGATATGTT CCTATTCACT AATGACAATC TCACCAAGTT CAACAAGCTC
AAGGCTGAAA AAGCACAGAA GGAACATGTT GAATCGCTTT ACATGGACCG ATTTGTCCAA
TCAGAAACAA AACCAATCAA AGCTACCAGA AAACGACTCA CAATAAAAAT AGACAAAGAT
ATCCCTTCTA AGAAAGTTAG ATTTTAAGTT GGGGTACGAT TTATAGAAAT AATACAATGT
ACAATACAGC TATATGCATA GCTATATAAT GATGCTATAC TACTGGTGCA ATTCTCTGAC
TACTATGGAG CCATCAGTAG AAGTAGAAAG GAGTAGTCTT CCATTTGCGC TGTAATCTAC
ATCTATGACT GTGCCTCGGT GGCCCCCGTA CTTATTGGTG ATCTTGCGAG TACTGAAATC
CCACTCTGTC ACTGTCAGAT CTTCAGAGCC AGAGAAGATA GTGATATCGT TGTCTGAGAA
GGTTGCTCTG ATCAATTGGT ACTCGTCTCC AGAAGGAGCT CCTTCATAGG TAAATGGACT
GATTCTGGAA ATTCCCTCAG GGACAAATTC TTTGGCACTA TATGTCTTCA TTACTCCATC
CATGGAACGC GCAAGCAAAA CAGAATCATC ACTATTCAAT GAAAGCGAAG TGATGGCTTC
CACTTGACCC TGGCAATTCC ATAATTGCAG CCCGAGCTTC CTTATATCGT GTACACGTAT
GGTCGGGTCT ATTCCAGCAA GGTATAAGGT GTTCCCAATC TTGTCGAAAG TAGTGGTCAA
TAAAGGGTAT TCTGTAGAAA CACATCCCAC AGAGTTCTTG TCACGAGGAT CCCAAAGAAA
GGCACTACCG TCATCCCCTA CACTTGCACT TAATGTCTGG GACGACATCG CTACTTGATT
AACTACCAAT TTGTGTTCCA GACACTTGCG TAATCTTTTT CCGGTCTCAG CATCCCAGAA
GCCAACAGTA TTGTCAGCAC TAGAACTGAC TAGAACTTCA CCGTCTGCCA GCCAGTCCAA
CGACGTAACT GCAGACTTGT GTCCTCTCAA GACACCGTAG TTTGGTGAGT CGTCACTTTC
GCTCGTTGGA ATATTCCATA GTAGTATGAG CTTGTCTGTG CCACTGGATG CTATAGAAGT
GCCTGACTTG TTGAACTTGC CTGAGAGTAC TACCCCCAGA TGCCCTTCTA GGACGACAGC
TTCGTTGTAT AGAGTATTTC CGTTGGCATT GCCAATTGGT TGAGTTCGTA CAAGCGACTG
TGGCTCGCCT GTATTGGCCT TATGTCTCTT CACCAACG
|
|---|
| Protein sequence | MTRSHHSKKS ALQHVVEITN DIEKLVSVGT LSFFNVPLEI SDLGGLTVDQ DSNNDTNSCD
NRFSSWKWLD ISFFLYLCSC RGIGLNPLIH GLHFLIMHRF AMATFNTYKV KIRNGYMTIF
KVRLYCVPAD VRGFRYIHEW RNSKPRVHLN EKNYKKYWST LLQYLDYSVA GWHIPQYEVG
IGQFVKQNSI LIDMKANASS NVDLTSVETL NYHIHRWTSN NKCEPFRATS NVTHKSKTLA
DRIQDIYNGI SSPDVSVYQK KSVEERGTTP NSKEVLVQLL NSRNTGDSQI DGVKTELYTF
QIRSIAKMYE KEVFPQKALS PNFVELRSPS NGFKFYFHLQ SYFVHIEPEI YSLPRGGILA
ENMGLGKTLI CLSLICLTKN DISQIPNDLL IHDPMEEPEL QELILDENDI LRPINAPRPQ
QVKSLSELCK QCVNQNSLPW RYYASDLPQS VVQALLKDPG YFQIPLVNKE YESQFSQRSR
KPSTRQSSKI EEGYSFRTLF LCNTTLIIVP DNLFHQWNTE LNKHIQPGFL SKLFISSQFR
KEIITSRGTY TNVSSKDPRD LIKYDLVIMT HSYLARQFGE LSSEENPLNK IYWKRLIIDE
GHSMNSKSSK TSNLCKVMQA ERRWAVTGTP TSGLTKLYMD EEQNETDSAT ASPKKKSKYV
VKSSFNEKED LVKLGTIVGN FLKIEPFHSR PKLWTKEVIQ PLVSKVYGSD VSLSNLLNAI
VVRHNSQDIE SDLKLPQLHH EAVYIEPSYH NKISINLFTA VLAVNAVSSE RTDIDYMFHP
SNRQQLRRLI TNLQRATFHW TGFQQDDVET LIHICNVSLK KRRANGQSVY DNYDVELLMK
SLEAAKFALS NTRWRTSALL HEMNYFVTGL PDAFIKSFGT GMVERIIEGE HDDIGVFGAP
HLNAIQEFYY KNRFLVMEDE ELLKSKLEFA SKPFWASYWI DSVRRNNERF KKQDQNQNFE
SNVKNGAIAN AINVPDVVRD YTPEYVMETA KFSTPRRNSV SKKSQISPKN ELTEDGLSGL
VITKEVHSGF SIRNENIRAS IREARILGTA SAKLSYLGSR LLEHQRNKIK SLIFFEFEDS
AYYLTELLDV LGVNYILYAT FINPAERARN LSLFSEYITD EQGGITLIMD LRLAAHGLTI
VEATHVYFMS PVWQRSIEAQ AIKRAHRIGQ TKDVHVETLV LRGTLEEEIY KRRTSNTDDN
EEDEGSKRKY VIDDTGMQEY ILRHRFLDYS ITETEYAPFV SPTTMHTNND VEEEDSEFSL
LNHRGLVVET NRHGFLHNWD MFLFTNDNLT KFNKLKAEKA QKEHVESLYM DRFVQSETKP
IKATRKRLTI KIDKDIPSKK VRF
|
|---|
| |