| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81885 |
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| Symbol | GCD6 |
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| ID | 4836820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 2452301 |
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| End bp | 2454743 |
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| Gene Length | 2443 bp |
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| Protein Length | 726 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388135 |
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| Product | translation initiation factor eIF-2B epsilon subunit, GEF |
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| Protein accession | XP_001383224 |
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| Protein GI | 150864420 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.541559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.64637 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CCCGCACGGA AGCGCTTTTA CGATTGTCTT ATATAGAACC AGTGGTTCAA CTCTGCCCTA
ATAGAAATGC CTCCCAAGAA CAAAAAGTCG AAGGAATCTG TTCAAGATGA GCGATTCCAG
GCCATCGTCT TGACAGATTC GTTCGAGACA AGATTTATGC CCTTGACGTC AGTTAAGCCC
AGATGTTTAT TGCCATTGGC CAATGTTCCA TTAATTGAGT ATACATTGGA GTTTCTTGCC
AAGGCTGGTG TAAACGAGGT CCATTTAATG TGTTCGTCTC ATGCTGAGCA GATCCAGCAG
TATATCTTGA ACTCAAAGTG GAATTCCAAA AATTCGCCAT TCTTGATCCA TACCGTTATG
TCCTTGGAAT CGAGATCCGT AGGTGATGCC ATGAGAGATT TGGATAACCG AGGTTTGATA
ACGGGCGATT TTCTCTTAGT TTCTGGTGAC GTGGTTACCA ACATCGATTT CGAAAGAGCC
ATGAACTTCC ACAAACAGAA GAAACTCCAG GACAAGGAAC ACATCGTCAC CATGGTGCTC
AATCAGGCAT CACCATTGCA TAGAACTAGA TCACACGTGG ATCCTGCCAC ATTCATATTG
GATAAAAAGA CCGACAGATG TTTGTTCTAC CAGGGAATTC CTCCAGTAGA CGGAGCAAAG
TCTAGCATCA GCATAGATCC GGAATTGATA GAAGACATTG AAGATGAGTT TGTTATCAGA
AACGACTTGA TCGATTGTTA CGTCGATATC TGTACACCTC ATGTGCCCCA GATCTTCCAG
GACAACTTTG ATTACCAGAC GTTGAGAAGC GATTTCCTCA AGGGTGTGTT AACTTCAGAC
TTGGTGAAGA AGAGTATCTA CGCTTACATC TCAGAAAATA GCGCTGAGTA TGCTGCAAGA
GTAGAGAGCT GGGCAACATA CGATGCCGTT TCACAAGATG TTCTAGCCAG ATGGTGTTAC
CCATTGGTTC CAGATGCCAA CTTGATCGAA AATAACTCGT ATACTTACGA GTTCAGTCAT
ATCTACAAGG AAGAGAAGGT CGTGTTAGCG CAATCGTGTA AGATTGGAAG CTGTACGTCT
ATTGGTGCTA ATACTACTGT TGGCGAGGGT TCTTCGATCA AGAAGTCTGT TATCGGCAGA
AACTGTAGGA TCGGCAAAAA TGTCATTATA AACAACTCGT ACATTTGGGA GAATTCAGTC
ATCGAAGACA ACTCTGTTCT CAACCATACC ATAATAGCTG GTGATGCTCT GATTGGATCA
AATGTGACGT TGAGTCCTGG CTCCGTCATT GGATTCAACG TTAAGATCGG CAACAACAAG
CACATCTCGC ACCATGTAAG AATTGTGGAG AAGCCTATTC TTAAGGATCT GTTTGATAGT
GATTCTTTCG ACACGGACGC TTCAGACGTA GACGAGGACG CACAGCAGCC TGCCATTCCA
CACATCGAGT TGAATATCAA GGATATCGAC TTGGTTGGCG AGGATGGTGA TGGATACTTG
TATGTTTCTG ATAGAGCAGT CGATGATGAG AGCGAATCTG AGTATGGCGA TCAATACTCG
GGAATCATCT ATCAATTCAA GCATTTGAAC GTCTCAGACG ATTCTATCGC CTCCATCTCT
AACCGTAAGG GCAAGAAGCG TTCTCACTCT AGAACTAGAA GATTATCTTC GAACTCTGTT
ATTTCTACAG ACTTTGAAGG TGGAGCCTTT TCTGACGATG AAGAGGAAGA TTTCGCTAAG
GAAGCTGAGG CAACAGTCCA CAGAGCCTTG GAAAATAACC ACGACTTGGA TACGGCACTT
TTAGAATTGA ATACCTTGAG AATGTCGATG AATGTCACAT ACCACGAAGT CAGGTTGGCT
ACTTGTCAAG TTCTCTTGCA AAAGATTGTA GAGTACATCA CTACCGATAC TTTGGCTGCA
AAAGAAGCTA CAACCAAGAT CTTTACGCAG TGGGGCCCTA TGTTCAAACG TCAAGTCTTC
AGCGAAGAAG AGCAAGTTGA CTTGTTGAAC ATTCTCCAGG ACAAGATTGC CAAGTTGGAC
AAAGCATATA ACCAGATAGT GTTGTTTCTT GCCGTGAGAA TCTTATATGA ATTGGACATT
GTGGAAGAAG ACCAGATCTT GAACTGGTGG AAGGACAACG AAGGCGACGA AGACAAAGAC
ATCCAATCTG TGAGAACGTT GACCGGCCAG TTCATTACTT GGTTACAGGA CGCAGAAGAA
GAGGAAAGTG ACGAAGAAAG CGATTAAAGT CGTTCACCTT TAAAGTGAAT ATGGGAGTGT
TGCAGACATT GGCAGTAGTA CTATAATACT GTTGCAGCCA TTATATATAA TGTCCTGCAC
GCCGCCGTAT AGACCGATTT GGTGAAGAGC AGCAGTTAAA AATTATACGA CTGAATAAAC
TTTGGTGAGT AGACTTCTAT AATAAAGATT TAATTCACGC TAC
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| Protein sequence | MPPKNKKSKE SVQDERFQAI VLTDSFETRF MPLTSVKPRC LLPLANVPLI EYTLEFLAKA
GVNEVHLMCS SHAEQIQQYI LNSKWNSKNS PFLIHTVMSL ESRSVGDAMR DLDNRGLITG
DFLLVSGDVV TNIDFERAMN FHKQKKLQDK EHIVTMVLNQ ASPLHRTRSH VDPATFILDK
KTDRCLFYQG IPPVDGAKSS ISIDPELIED IEDEFVIRND LIDCYVDICT PHVPQIFQDN
FDYQTLRSDF LKGVLTSDLV KKSIYAYISE NSAEYAARVE SWATYDAVSQ DVLARWCYPL
VPDANLIENN SYTYEFSHIY KEEKVVLAQS CKIGSCTSIG ANTTVGEGSS IKKSVIGRNC
RIGKNVIINN SYIWENSVIE DNSVLNHTII AGDASIGSNV TLSPGSVIGF NVKIGNNKHI
SHHVRIVEKP ILKDSFDSDS FDTDASDVDE DAQQPAIPHI ELNIKDIDLV GEDGDGYLYV
SDRAVDDESE SEYGDQYSGI IYQFKHLNVS DDSIASISNR KGKKRSHSRT RRLSSNSVIS
TDFEGGAFSD DEEEDFAKEA EATVHRALEN NHDLDTALLE LNTLRMSMNV TYHEVRLATC
QVLLQKIVEY ITTDTLAAKE ATTKIFTQWG PMFKRQVFSE EEQVDLLNIL QDKIAKLDKA
YNQIVLFLAV RILYELDIVE EDQILNWWKD NEGDEDKDIQ SVRTLTGQFI TWLQDAEEEE
SDEESD
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