| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81799 |
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| Symbol | CDH1 |
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| ID | 4837081 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 125476 |
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| End bp | 127698 |
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| Gene Length | 2223 bp |
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| Protein Length | 592 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640388396 |
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| Product | substrate-specific activator of APC-dependent proteolysis |
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| Protein accession | XP_001382788 |
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| Protein GI | 150864091 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0740559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.327492 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CCGGCCTAGA CACTAAGCCC TCCAATTTTG CAGTCCCTGT TGTTTTCAAT TTGCAGCATT
ATATCTATTT CCATATTTGG GTCCATCCGT TCTCCTCCCA CATAAACGTA ATCGTTATAG
ATCTTTGTCA GAGTCTCACT CAGTATTTGC TACGCCAATA ATCTTCTATT GTATTATCCT
TATACCATAT ATCAAAACTA TCTATCACCT GTACCACTAA ATATCTGCTA CGTCTACTTG
CTATTGCTAT TACTATTTAC TATTTCCTTC CAATATGAGC AATAATAGTA ATCTCAATAG
TAGCAGTTCT AGAAACACCT CACAGCATAT CAATATACCC AGCCGTGGCA ACAATAATAA
CAACACCATC AATGTGTTTG AGACTCCACG GTCGCCTTCC AGATCCACAC GCAGCTTGGA
TCCACCCAAG CTTAACGATG CTCCCATATT GCCGTCGACT TCTCCAAGAC GTCGCAACAA
TAAGTCTATA TTCAGCGATA GATATATCCC CAATAGAACG GGCATAGATC TCCAAGCAGC
ATTCAGCTTA TCCAACGAAG AAGTGATACC TGATCTTCGT AGTAACAATG CTGACAACGA
GATCGAAATC CGTAAAGAAG AAGAAGCTAA CCGGACGTTT TCGACGGTGT TGAAGGCAGA
GCTATTCGGC GATAATGTTC CGATGGCCAC AGCCAACTTG TCGTCAGGAC TTTCGAGCTC
TAGGAAAACT TTAGGAAAAC CCAATACGAT TAGGCCGAGC AGTTCAAGCA ACGGTTTACA
ATCGTCAACT CGTTCCATCG CTGATGGTGG TGCCAACATT ACTGGAACAC CTCCCAGACC
CTCCGTATCT TCAACTCCTC GGTTAGGCAC TGGCTCTTCG GGATCAACAT CCAACTCTCA
CAACGACAGC TCTCCAAGTA GTAACAACAA CAATGGCAAT ACCATTAACG GAGGCTCTAA
TTTACACGAT GTAGACGATG TCACGAGAAC TCCACGTAGA AAAACGAACC TTTTTACCTA
CCAGTCACCC CAAAAATCAC GGCCTATCTC GCGTGATCTC CAGCAGGAGC TCTACTCGTT
GTCTCCGGTG CGACAGGAAT CGCAGAAACT TCTACTTTCT CCACAAAAGA AACCTCGCAG
TATCTCCAAA GTGCCGTACA GAGTCTTGGA TGCTCCTGAG CTATCTGACG ATTTCTACCT
CAACTTGGTT GATTGGGGTC AACAGGACAT TTTGGCAGTA GGCTTGGGTG ACAGCGTGTA
TCTCTGGGAC GGAGCTACTC AATCAGTAGA CCGTCTCTGC AATCTAGCTA ACAAAGATAA
AGTCACCAGT TTGAACTGGA TAGGTTCAGG AACCCATCTC GCAATTGGCA CTTCAAAGGG
TCTAGTAGAA ATCTGGGATG CCACCAAAAT CAAATGTGTT AGAACCATGA CAGGTCACAG
CTTGCGTGTG AGCTCTTTGG CATGGAACGA ACACATACTA TCCAGTGGAT CTAGAGACCG
AAGCATCCTC AATCGAGACG TCAGAGTGGA AAACCACTAT GTCAACAAAT TTGAAAGTCA
CAAACAGGAA GTCTGTGGTT TGAAATGGAA TGTAGAAGAG AACAAATTAG CCAGTGGTGG
CAACGACAAC AAGCTCTTTG TTTGGGATGG TTTGAATCCC AAACCGTTGC ATCAATTCAC
AGACCATAGT GCTGCTGTGA AGGCTATAGC ATGGTCCCCC CACCAACGAG GCATACTAGC
TTCAGGAGGT GGTACAGCTG ATAAGACCAT CAAGACATGG AATACTCTTA CTGGTAACTT
AGTGCATGAT GTAAATACTG GCTCGCAGGT CTGTAATTTA ATCTGGTCCA AGAACTCCAA
TGAATTGGTT TCTACCCATG GCTATTCGAG GAATCAGATC ATAGTGTGGA AGTATCCTTC
TATGCAACAA ATAGCCCAAT TGACAGGACA CACCTATAGA GTCTTGTACT TGTCGTTGTC
ACCAGATGGC GAGACTATTG TTACTGGTGC TGGGGACGAA ACTTTACGGT TCTGGAACGT
CTTTGAGAAA AACAAACAAA ACGAGCCTCC GTCTTCGGTG TTATTGGATG CATTTCTGCA
GCTACGCTAA TGAATTGTAT AGATCTTCAA GTTTGTATGT GATGTTCAGT AGTAATGTTA
CAATAATATA CAAGGGATTC AAGAGTGGAC TAATTCCACT CAAGATGCTA TAATAAGAGT
TAT
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| Protein sequence | MSNNSNLNSS SSRNTSQHIN IPSRGNNNNN TINVFETPRS PSRSTRSLDP PKLNDAPILP
STSPRRRNNK SIFSDRYIPN RTGIDLQAAF SLSNEEVIPD LRSNNADNEI EIRKEEEANR
TFSTVLKAEL FGDNVPMATA NLSSGLSSSR KTLGKPNTIR PSSSSNGLQS STRSIADGGT
GSSGSTSNSH NDSSPSSNNN NGNTINGGSN LHDVDDVTRT PRRKTNLFTY QSPQKSRPIS
RDLQQELYSL SPVRQESQKL LLSPQKKPRS ISKVPYRVLD APELSDDFYL NLVDWGQQDI
LAVGLGDSVY LWDGATQSVD RLCNLANKDK VTSLNWIGSG THLAIGTSKG LVEIWDATKI
KCVRTMTGHS LRVSSLAWNE HILSSGSRDR SILNRDVRVE NHYVNKFESH KQEVCGLKWN
VEENKLASGG NDNKLFVWDG LNPKPLHQFT DHSAAVKAIA WSPHQRGILA SGGGTADKTI
KTWNTLTGNL VHDVNTGSQV CNLIWSKNSN ELVSTHGYSR NQIIVWKYPS MQQIAQLTGH
TYRVLYLSLS PDGETIVTGA GDETLRFWNV FEKNKQNEPP SSVLLDAFSQ LR
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