| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81500 |
|---|
| Symbol | COR1 |
|---|
| ID | 4837554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 2648196 |
|---|
| End bp | 2649753 |
|---|
| Gene Length | 1558 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640388869 |
|---|
| Product | ubiquinol-cytochrome c reductase core subunit 1 |
|---|
| Protein accession | XP_001383256 |
|---|
| Protein GI | 126133462 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCTGTAGTTC TTTTTTATAT CTGACAAGCC AAGATGATCC GTGGCTCAGC CCTCCGTACC
TCCGCCAAGT CCTTGACTGC TCGCCGTTTG TTGTCCACCG CAAATGGCCA GACCAAGTAC
ACTACTCTCT CTAACGGTGT TACTATTGCT TCTGAGACAA ACACCAACGC TGCCACTGCC
ACCGTAGGGT TATACTACGG TGCTGGTTCG CGTTCTGAAC ATCCATACAA CAACGGTGTT
TCAGCATTGA CTGCTTCGAT TTTGGGCTCG GGCTTACAGG ATGGTGTTTT ACTTTCTTCT
GAGTCTACCA AGGAAACCAA TGGTATCTTA GCCACCACCA CCAACGCCAA CATCGCCAGT
GCCGGAAAGC TCATTGCTCA AATCGCCTCT AACCCTGTTC AGATTTTGGA GAAGTCCGAC
TTTGCTGCTG CCAAGAACAA GTTGGCTGCT GCTGCCGACG CTGTAGAAGC TGATCCTAAC
GCTAAAGTGT TGGAACACTT GAATGCTTCT GCTTTCCAGG GTTACTCGCT TGGATTGCCA
ACTTTGGGTA CTTCTGAATC CGTTCAAGAC TTGGAGCTCC AAGACGCCGT TCGTTCGTTG
GAAAAGCACT TGGTAGCCTC CAACACCGTC ATTGCTGCTG CTGGTAACTT TGACCACGAA
GCTCTTGTTG CTGCTGTGGA AGCCAACTTG ACCTTGACCC AAGGCTTGAA GCCACAAGAG
AAGCCAGCTT CGTTTTTGGG ATCTGAAGTC AGAATGAGAG ACGACACCTT GCCAAAGGCT
TACGTCGCTA TTGCTGCCCA AGGTGAAGCC TTCAACTCGC CAGCCTACTA CGTAGCCAAG
GTCGCTGCTG CCATCTTTGG TGACTTCGAC CACCACTCTG CTTTTGCCGC ATACACCAGT
CCTAAGCTCG CATCCATTGT ACAAGAATAC CACATCGCCG ACAAGTACAC CCACTTCTCC
ACCTCGTACT CTGACACTGG TTTGTGGGGT TTTGCCTCGG AAATCTCTAA CATCGAGGCC
ATCGACGACT TCACCCACTT TACGTTGAAG GAATGGAACA GATTGTCTGT TTCCATCTCC
AACGCTGAAG TTGCCCGTGG TAAGGCTGCT GTCAAGACTG CCTTGTTGAG ACAATTGAAC
TCGACCCCAG CTGTAGTATC TGACATCGCT ACCAAGGTAT TGTTGGCTGG CTACAGATCC
TCGGTCAAGG AAGCTCTCGA AAAGATTGAT GCCATCCAAA CCAAGGACGT CAAGGCATGG
GCCCAGGCTA CCTTGTGGGA CAAGGACATT GTCATCTCCG GAACTGGTCA AATCGAAGAC
TTGCTCGACT ACAACAGAAA CAGAAACGAG ATGGCCGCTT TGAGATGGTA AGCGGACTTT
GTTTCTCTTC TGTTTAATTC TCTACTTGCA TGTTTTAAGA AAGCTTTACA CTTTCAAAAA
TATATTTAAA AGACAATAGA AAGTAAGATC TTGATTCAAA GTCTCATGTT GTCCTACAAC
CAAATCCATT TCGTATATAA CCCTTACATA TTATTTTGAA TATACTAATT TTATTCCG
|
|---|
| Protein sequence | MIRGSALRTS AKSLTARRLL STANGQTKYT TLSNGVTIAS ETNTNAATAT VGLYYGAGSR
SEHPYNNGVS ALTASILGSG LQDGVLLSSE STKETNGILA TTTNANIASA GKLIAQIASN
PVQILEKSDF AAAKNKLAAA ADAVEADPNA KVLEHLNASA FQGYSLGLPT LGTSESVQDL
ELQDAVRSLE KHLVASNTVI AAAGNFDHEA LVAAVEANLT LTQGLKPQEK PASFLGSEVR
MRDDTLPKAY VAIAAQGEAF NSPAYYVAKV AAAIFGDFDH HSAFAAYTSP KLASIVQEYH
IADKYTHFST SYSDTGLWGF ASEISNIEAI DDFTHFTLKE WNRLSVSISN AEVARGKAAV
KTALLRQLNS TPAVVSDIAT KVLLAGYRSS VKEALEKIDA IQTKDVKAWA QATLWDKDIV
ISGTGQIEDL LDYNRNRNEM AALRW
|
|---|
| |