| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_70645 |
|---|
| Symbol | |
|---|
| ID | 4836654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 1027188 |
|---|
| End bp | 1029097 |
|---|
| Gene Length | 1910 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640387969 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382971 |
|---|
| Protein GI | 126132892 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0413957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.317652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTACAATCCT TATTTTATTG TAATGTCCGT GAGTGCTCAA GACGAAAAGG TGGAATCCTT
AGACAAGCAA TTCTCCAGTT CCGAGACTGA TCTCCAAGCT GCTACCAACC CTAGCGTTGA
GGATGAAGGC AGAACTCCAA CTGAAGATGA AATGAAGACT TTGAGACATG TCTCTGAATC
TATTCCTATT TCTTGTTGGT TAGTTGCAAT TGTCGAATTG GCAGAAAGAT TCTCCTACTA
TGGTTTATCT GCTCCATTCC AAAACTATAT GCAAAATACC CCTCAAGATT CACCAAAGGG
TGTCTTGGGT TTGAACCAAC AAGGTGCTAC AGCCTTATCT TACTTCTTCC AATTTTGGTG
TTACGTTACC CCAATTTTGG GTGGTTGGAT TGCTGATACT TACTGGGGAA AGTACAAGAC
TATCTTTGTT TTCTGTGTTA TCTACATCGT CGGTATTTTC ATTCTTTTCA TCACTTCTCT
TCCTTCAATT ACTAGCCGTA CTACTGCTCT TGGTGGTTAC GTGGCTGCTA TCATCATTAT
CGGTCTTGCT ACCGGTGGTG TCAAGTCAAA CGTCTCTCCT TTGATCGCCG ATCAAATTCC
AAAAACTCAC CCTGTTATTA AGGTATTGAA GTCTGGTGAA AGAGTCATTC AAGACCCTAA
TATTACCATT CAAAATGTTT TCATGTTCTT CTATCTTATG ATTAACATTG GTTCCATGTC
TGTCATTGCT ACCACTCAAT TAGAAGCTCA CGTTGGTTTC TGGGCTGCTT ACTTATTGCC
ATTTTGTTTC TTCTTTATTG CCCTTCTTGC CCTTGTTCTC GGCAGAAACC AATATGTCAA
GGTTCCAGTT GGTGACAAAG TGATCAACAA AACCTTCAAG TGTGCCTGGA TTGGTTTGAG
AAACGGTTTC AACATGGACG CTGCTAGACC ATCCATGAAC CCAGAAAAAG AATTCCCATG
GAACGACCAT TTCGTTGATG AAGTTGTCAG ATCTGTTTAC GCTTGTAAGG TTTTTGTTTT
CTACCCTATC TACTGGGTTG TTTACGGTCA AATGTTGAAC AACTTCGTCT CCCAAGCAGG
TCAAATGGAA TTGCACGGTT TGCCTAACGA TATCTTGCAA GCTATCGATT CGCTTGTCAT
TATTATCTTC ATTCCTATCT TTGAAAGACT TGTATACCCA TTCATCAGAA AATTCACTCC
TTTCAAGGCT ATCACTAAGA TTTTCTGGGG TTTCATGTTT GGTGCTGGTG CCATGGTATA
CGCCGCCGTC TTGCAACACT ACATTTACAA GACCGGCCCA TGTTACGACC ATCCAAAGGC
TTGTGCTCCA CAATACCTTA ACGTTCCAAA CCGTGTTCAC GTTGCCATTC AAGCTCCAGC
TTACTTCTTG ATTGCTATTT CTGAGATTTT GGCTTCTATT ACTGGTTTGG AATATGCCTA
CACAAAGGCT CCAGTTTCCA TGAAGTCGTT CATTATGTCC CTTTTCTTGT TGATGAATGC
TTTCGGATCT GCTCTTGGTA TTGCTTTGTC ATCCACTTCT GAGGACCCCA AGATGGTCTG
GACCTACAGT GGATTGGCAG TTTCTTGTTT CATTGCCGGT ATTGCTTTCT GGTTGTGTTT
CAAGCACTAC AACTACAAGG AAGACGAATT GAACGCTTTA GAATACGATG ACGAAGAAGA
AAGAAACATT GTGCCTGTTA CTTCATTGTC ACACTCCGTC AAGAGTCTTG CATAAGGAAA
TTTGACATTT CTTTCTACTT TACGACTATG CAAATCCGAG AGGACTACGC AATCGAGCGT
TTTCATTGTA TTTATAAGGA CAGGCTTTCT TCATTCATAA CATTTCATTC ATAAAACTTC
TATAGAATGT CCTCACATCT CTGTATAATA ATTAATAAAA TCAAGCATAA
|
|---|
| Protein sequence | MSVSAQDEKV ESLDKQFSSS ETDLQAATNP SVEDEGRTPT EDEMKTLRHV SESIPISCWL
VAIVELAERF SYYGLSAPFQ NYMQNTPQDS PKGVLGLNQQ GATALSYFFQ FWCYVTPILG
GWIADTYWGK YKTIFVFCVI YIVGIFILFI TSLPSITSRT TALGGYVAAI IIIGLATGGV
KSNVSPLIAD QIPKTHPVIK VLKSGERVIQ DPNITIQNVF MFFYLMINIG SMSVIATTQL
EAHVGFWAAY LLPFCFFFIA LLALVLGRNQ YVKVPVGDKV INKTFKCAWI GLRNGFNMDA
ARPSMNPEKE FPWNDHFVDE VVRSVYACKV FVFYPIYWVV YGQMLNNFVS QAGQMELHGL
PNDILQAIDS LVIIIFIPIF ERLVYPFIRK FTPFKAITKI FWGFMFGAGA MVYAAVLQHY
IYKTGPCYDH PKACAPQYLN VPNRVHVAIQ APAYFLIAIS EILASITGLE YAYTKAPVSM
KSFIMSLFLL MNAFGSALGI ALSSTSEDPK MVWTYSGLAV SCFIAGIAFW LCFKHYNYKE
DELNALEYDD EEERNIVPVT SLSHSVKSLA
|
|---|
| |