| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65303 |
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| Symbol | TEF1 |
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| ID | 4837420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2407076 |
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| End bp | 2408595 |
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| Gene Length | 1520 bp |
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| Protein Length | 458 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640388735 |
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| Product | Elongation factor 1-alpha (EF-1-alpha) |
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| Protein accession | XP_001382687 |
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| Protein GI | 126132324 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
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| TIGRFAM ID | [TIGR00483] translation elongation factor EF-1 alpha
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.977722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTAAGG AAAAAACACA CGTCAACGTC GTTGTTATCG GTCACGTCGA TTCTGGTAAG
TCCACTACCA CCGGCCACTT GATCTTCAAG TGTGGTGGTA TTGACAAGAG AACCATTGAA
AAGTTCGAAA AGGAAGCCGC TGAATTGGGT AAGGGTTCTT TCAAGTACGC TTGGGTTTTG
GACAAACTTA AGGCTGAAAG AGAAAGAGGT ATCACTATCG ATATCGCTTT GTGGAAGTTC
GAAACTCCAA AGTACCACGT CACCGTCATC GATGCTCCAG GTCACAGAGA TTTCATCAAG
AACATGATCA CTGGTACTTC CCAAGCTGAC TGTGCTATTT TGATTATCGC TGGTGGTACC
GGTGAATTCG AAGCTGGTAT CTCTAAGGAC GGTCAAACCA GAGAACACGC TTTGCTTGCC
TACACCTTGG GTGTCAAGCA ATTGATTGTT GCTGTCAACA AGATGGACTC CGTCAAGTGG
GACAAGAACA GATTCGAAGA AATCGTCAAG GAAACCTCTA ACTTCGTCAA GAAGGTCGGT
TACAACCCAA AGACTGTTCC ATTCGTCCCA ATCTCTGGTT GGAACGGTGA CAACATGATT
GAACCATCTC CAAACTGCCC ATGGTACAAG GGTTGGGAAA AGGAAACCAA GGCCGGTAAG
TCCTCTGGTA AGACCTTGTT GGAAGCCATT GACGCTATCG AACCACCTTC GAGACCAACC
GACAAGCCAT TGAGATTGCC ATTGCAAGAT GTTTACAAGA TCGGTGGTAT TGGTACGGTG
CCAGTCGGTA GAGTTGAAAC CGGTATCATC AAGGCCGGTA TGGTTGTCAC CTTTGCCCCA
GCTGGTGTCA CCACTGAAGT CAAGTCCGTC GAAATGCACC ACGAACAATT GACTGAAGGT
GTCCCAGGTG ACAACGTTGG TTTCAACGTC AAGAACGTTT CCGTCAAGGA AATCAGAAGA
GGTAACGTCT GTGGTGACTC CAAGAACGAC CCACCAAAGG CTGCTGAATC TTTCAACGCT
CAAGTTATCG TCTTGAACCA CCCAGGTCAA ATCTCCTCTG GTTACTCTCC AGTCTTGGAT
TGTCACACTG CCCACATTGC TTGTAAGTTC GACACCTTGA TTGAAAAGAT TGACAGAAGA
ACTGGTAAGA AGTTGGAAGA AAACCCTAAG TTCGTCAAGT CCGGTGATGC TGCTATCGTC
AAGATGGTCC CAACCAAGCC AATGTGTGTT GAAGCCTTCA CTGACTACCC ACCTTTAGGT
AGATTCGCCG TCAGAGACAT GAGACAAACC GTTGCCGTCG GTGTCATCAA GTCTGTTGAA
AAGTCTGACA AGGCCGGTAA GGTTACCAAG GCTGCTGTCA AGGCCGGTAA GAAGTAAGCT
GATTAATTTA CGTATATTCA GTTTAATATC AATACGTTAG CTACATTTCC AATGAACGAT
ACTAGATATT GTTTAGGATT ATTGAACTGG TATAGATAAT TTTAGTGTAT ATTCATGTAC
TTGATAAATG TAATAATATG
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| Protein sequence | MGKEKTHVNV VVIGHVDSGK STTTGHLIFK CGGIDKRTIE KFEKEAAELG KGSFKYAWVL
DKLKAERERG ITIDIALWKF ETPKYHVTVI DAPGHRDFIK NMITGTSQAD CAILIIAGGT
GEFEAGISKD GQTREHALLA YTLGVKQLIV AVNKMDSVKW DKNRFEEIVK ETSNFVKKVG
YNPKTVPFVP ISGWNGDNMI EPSPNCPWYK GWEKETKAGK SSGKTLLEAI DAIEPPSRPT
DKPLRLPLQD VYKIGGIGTV PVGRVETGII KAGMVVTFAP AGVTTEVKSV EMHHEQLTEG
VPGDNVGFNV KNVSVKEIRR GNVCGDSKND PPKAAESFNA QVIVLNHPGQ ISSGYSPVLD
CHTAHIACKF DTLIEKIDRR TGKKLEENPK FVKSGDAAIV KMVPTKPMCV EAFTDYPPLG
RFAVRDMRQT VAVGVIKSVE KSDKAGKVTK AAVKAGKK
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