| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65204 |
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| Symbol | INO80 |
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| ID | 4837640 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1284385 |
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| End bp | 1288431 |
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| Gene Length | 4047 bp |
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| Protein Length | 1269 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388955 |
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| Product | DNA ATP-dependent helicase similar to Snf2p |
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| Protein accession | XP_001383014 |
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| Protein GI | 150864264 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.066494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCT CGTCCATGCT CTCCAACGAG AGCAGCACGC CTCCACCGGA TACGTTTGTC
AAGAATGAAG ATCATGAGAT CCTCAACGGA AAGTCTGCTG TAGAAAATGT GGAACCCCTC
GACAACGTGA TAGGGCCCAT ATTGAAGGTT CCATCCTCCG TTCACGCCGT GAATGGCTCT
GAAGAAAACG GAATCGATCC AGACTACAAA GCAAAATTCG AGTCTCAAGT CAGTATCATG
GCACAGTTGG ATAGAGATGC TACATTGGCT AACGAATTAC GACTTCTTGT CTTTGACGAA
GTCAAGCTCA ACAATTTGAT ATTGAAAACA GCGGACATGT CCTACAACTA CATCGACCGA
GTTGTTGCAG AAGACATCTC GTCAAGAAAT AACAAAATCT CAGACACCAA CAAGAATAAA
GACTTGACTC CCCTAGATTA CTCAAAGCCT CTCCACCACA ATACGACCAG AGGCAAAGAG
TTCAAGTGGG GTTCCACCAG AGAAGTCAAC AAAATTGAGC CCAAAACTCG CAGAAAGAAA
CCCTCGTCTT CGGGAACACC GCTGGCTGCT GGCGCTTCTC CTTCTGTGAG GGGAGCTTCG
AAAAAGAGCT CTAGAGCAAA GAGAACAACT ACGGATTCGC CAGATGTACC AACTAAAAGA
CATAGAAGGG GTAAGGACGA TGAAGACGAA GGCAGAACCA AGCTCAAGAT CAAGATCTCC
CTCAAAAAGG ATACCGGCAG TGCTGAGGAA ACCAATAAGA CCAACTCTAA AGAACTCAAG
GCTCTTGTAA AACAGTATGA CAACACCTAT GTGGCTATCT GGAAGGATAT GTCAAGAAAG
GATGGGCCAA AGGTGTCGAG ATTGATGCAA CAGGCTACGC AAGCAAAACT TATCAATCTC
AAGAAGACGT CGATTCTCGC AGCCAGAGAA GCCAAGAGAT GGCAGCTTCG TAACAACAAG
AACCAGAAAG ATCTCACAAC TAAGGCCAGA AGAGCAATGA GAGAAATGTT CAACTTCTGG
AAACGGAACG AGAGAATCGA GCGTGAATTG CGTAAAAAAC ACGAAAAAGA ATTAATCGAT
AGAGCTAAAA AGGAAGAGGA AGAAAGAGAA GCCAAGCGAC AACTGAGAAA GTTGAATTTC
TTGATTACCC AGACAGAATT GTACTCCCAT TTTATTGGGA AAAAGATCAA GACAGACGAG
ATCGAAGGGA TTGATTCTGA TCCGAATATC AGGAGTCTTA AGACGGATAG CAACTACGAT
AAGTATGTGG GCGTAGATGG AAGTAAAAAG CACGATATTG ACTCCCTTGA CTTCGATAAC
GATGACGAGG AAGCCTTGAA TAAGGCAGCT GCTGCCAACG CACAAAATGC TCTCAGTGCT
GCCCAAAATA AAGCTAAACA ATTTAACGAA GATCCGTTGA AGAATCCTGA CACTAACGGT
GAAGAAATGA ATTTCCAGAA TCCAACGTTG ATGGGAGACA TTTCCATAGA ACAACCGAAG
ATGTTGAAGT GCACGCTCAA GGAGTACCAG ATCAAGGGTT TGAACTGGTT GGCCAATTTG
TATGAGCAGG GTATCAACGG TATATTGGCA GATGAGATGG GTCTTGGTAA AACAGTCCAG
AGTATCTCTG TTCTTTCCTA TTTAGCCGAG ACTCACAATA TCTGGGGTCC CTTTTTAGTT
GTAACCCCTG CTTCTACATT ACACAACTGG CAGCAAGAGA TCACCAGATT TGTTCCTGAC
TTCAAGGTCT TGCCCTATTG GGGTAACGCA AAGGATCGTA AGGTCTTAAG AAAGTTCTGG
GATAGAAAGA GCTTCAGATA CGGAAAGGAT GCTCCATTTC ATGTATTGGT TACTTCTTAC
CAATTGGTCG TTCAGGATGC TGCATATTTC CAGAAGATGA AATGGCAATA CATGATTCTT
GATGAAGCAC AGGCTATCAA GTCTTCACAA TCCTCCAGAT GGAAGTCTTT GTTGTCTTTC
AGTTGTAGGA ACAGATTGTT GTTAACTGGT ACACCTATCC AGAACTCAAT GCAAGAGTTG
TGGGCGTTGC TTCACTTTAT CATGCCTTCT CTTTTCGATT CACACGATGA ATTCTCTGAC
TGGTTCTCGA AGGATATCGA GAGCCATGCA CAGTCCAATA CCAACTTGGA TGAACAGCAG
TTGCGCCGTT TGCATGTTAT CTTGAAGCCG TTCATGTTGA GAAGAATTAA GAAAAATGTC
CAGAGCGAGC TTGGTGACAA GGTCGAAATT GATATTTTCT GTGACTTGAC CAACCGACAA
AAAAGGTACT ACCAGATGTT GCGTTCGCAA ATATCCATAA TGGATTTGTT AGATTCGGCA
AATAGCAACA ACGACGACGC CACCAGTTTG ATCAACTTGG TTATGCAATT CAGAAAAGTT
TGTAACCATC CTGATTTGTT TGAAAGAGCA GACGTCAAGC TGAGTTTCTC GTTTGGCAGA
TTTGCTGAAA CCAGTTCGTT CATGAGGGAA GGAAACGACT TAGAAATGGC GTACACCTCT
GAAAACTTGA TCAAGTACAA CTTTCCCCGT TTAGTATACG ATGAGTTGTT GACACCTACG
TTCAATAACA GCATAGGTTC TAAGCAGAAG ATCTTTGAGA CTTTCAGCAT ATACAATGCC
GACAATATCG ACAACGGCAA CAATGACACG TTTGGATGGT TGAGATTCGT GGATCATTCG
CCACGTGAGT TGAAGAGAAA GGCATATCAA AACGTCATTG AGAGAGCCAT TGAGCGCAAA
GAGTACTCAG ACATAAACTA TGATGGGATA AATCGCTTCA ATCAGGTATA TGACGGCGAT
TTCATTCCAA CACTGAAACT GTTGCTTATT GTAGAACATA ATAACGACAT CATTCATAAG
ATGAATGCTT CCGATGTGAA GGAACTCTTT TCTATCCAGC AACGTGTTTA CGAGGATATG
TACATAAACA ATATTGATCC AGCTGCGGAA CCTATTGCTT GTGCCACACC TATAACCGCA
CTTTGTAGCT CGGTTTCTTT CCCACAGAAG ATTGAAAACG TCTTGTTTGA TACCAAAGTG
AGAGCTAGTT TGATGCCGTT ATCGTTGAAT AACGAATACG AGTTGTTGAA ACACAATGTA
CCAGTCCCAG AGTTTCCCAA GTCTAGTTTG TTGCCTTCGT CTATTAGTAA GAAGATTGAC
TACTCCAACA TCCGAATGCC TTCAATGAAT AGATTCATTA CCGAGGCTGG TAAGTTGGCC
AAATTGGATG AGTTGTTAGT CGAATTGAAG CAGAACGATC ATAGAGTGTT GATCTACTTC
CAGATGACCA GAATGATGGA TTTGATGGAA GAGTACCTCA CCTACAGGCA GCACAAGTAC
ATTAGATTGG ACGGTTCTTC CAAATTGGAC GATCGTCGTG ATTTGGTGCA CGACTGGCAA
ACCAAACCGG AAATATTCAT TTTCTTGCTT TCCACAAGAG CTGGTGGTTT GGGAATCAAT
TTGACAGCTG CAGACACAGT CATCTTCTAT GACTCTGATT GGAATCCTAC CATTGACTCT
CAAGCGATGG ACAGGGCCCA TAGATTGGGC CAGACTCGTC AAGTGACAGT GTACAGATTG
CTCACCAGAG GAACAATCGA AGAAAGAATG AGAGATCGTG CTAAGCAGAA GGAACAGGTA
CAACAAGTGG TCATGGAAGG CAGAGCAGCG TTGCCCTCTA AGAAAGAAGA AGCTGCTAAC
AAAAAGAAAG ACGTTGCCTT CTTGTTACTT GGAGAGGATA ATGACGATAG TTCAGAGAAG
CTGGTAGCAA GTTCTATCGC GTCTACCCCA GCTCCTGAGA ACGGACAGTC TAAGAAGAAG
AGAAAGACCG TCACTGCCGA GGATGCTTTG TCTAGCAAGA AGTTAGAGGA GTTGTATCAC
GAAGGTGAAG GTTCTTTCTC TGGAAATGCC ACTCCTGCTC TTTAGGGGTT TCAATTGACA
TAATGAGGTC TCTTGTGTAC ATTAAATAGA TCTAACTATT AGTGGTGTAT AAATAGAAGT
ATTATTAAGA AATGAATAAA TAGTAAT
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| Protein sequence | MNISSMLSNE SSTPPPDTFV KNEDHEILNG KSAVPSSVHA VNGSEENGID PDYKAKFESQ
VSIMAQLDRD ATLANELRLL VFDEVKLNNL ILKTADMSYN YIDRPLHHNT TRGKEFKWGS
TREVNKIEPK TRRKKPSSSG TPSAAGASPS VRGASKKSSR AKRTTTDSPD VPTKRHRRGK
DDEDEGRTKL KIKISLKKDT GSAEETNKTN SKELKALVKQ YDNTYVAIWK DMSRKDGPKV
SRLMQQATQA KLINLKKTSI LAAREAKRWQ LRNNKNQKDL TTKARRAMRE MFNFWKRNER
IERELRKKHE KELIDRAKKE EEEREAKRQS RKLNFLITQT ELYSHFIGKK IKTDEIEGID
SDPNIRSLKT DSNYDKYVGV DGSKKHDIDS LDFDNDDEEA LNKAAAANAQ NALSAAQNKA
KQFNEDPLKN PDTNGEEMNF QNPTLMGDIS IEQPKMLKCT LKEYQIKGLN WLANLYEQGI
NGILADEMGL GKTVQSISVL SYLAETHNIW GPFLVVTPAS TLHNWQQEIT RFVPDFKVLP
YWGNAKDRKV LRKFWDRKSF RYGKDAPFHV LVTSYQLVVQ DAAYFQKMKW QYMILDEAQA
IKSSQSSRWK SLLSFSCRNR LLLTGTPIQN SMQELWALLH FIMPSLFDSH DEFSDWFSKD
IESHAQSNTN LDEQQLRRLH VILKPFMLRR IKKNVQSELG DKVEIDIFCD LTNRQKRYYQ
MLRSQISIMD LLDSANSNND DATSLINLVM QFRKVCNHPD LFERADVKSS FSFGRFAETS
SFMREGNDLE MAYTSENLIK YNFPRLVYDE LLTPTFNNSI GSKQKIFETF SIYNADNIDN
GNNDTFGWLR FVDHSPRELK RKAYQNVIER AIERKEYSDI NYDGINRFNQ VYDGDFIPTS
KSLLIVEHNN DIIHKMNASD VKELFSIQQR VYEDMYINNI DPAAEPIACA TPITALCSSV
SFPQKIENVL FDTKVRASLM PLSLNNEYEL LKHNVPVPEF PKSSLLPSSI SKKIDYSNIR
MPSMNRFITE AGKLAKLDEL LVELKQNDHR VLIYFQMTRM MDLMEEYLTY RQHKYIRLDG
SSKLDDRRDL VHDWQTKPEI FIFLLSTRAG GLGINLTAAD TVIFYDSDWN PTIDSQAMDR
AHRLGQTRQV TVYRLLTRGT IEERMRDRAK QKEQVQQVVM EGRAALPSKK EEAANKKKDV
AFLLLGEDND DSSEKSVASS IASTPAPENG QSKKKRKTVT AEDALSSKKL EELYHEGEGS
FSGNATPAL
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