Gene PICST_55948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_55948 
SymbolCAR12 
ID4836902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp1870981 
End bp1872069 
Gene Length1089 bp 
Protein Length362 aa 
Translation table12 
GC content43% 
IMG OID640388217 
Productarginase 
Protein accessionXP_001382587 
Protein GI126132124 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0010] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.79052 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.29627 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGC AGTCGAAAGT TAATCTTCCC TCCGATGACG ATACTTCTGA TATTCTTATG 
GACCAAGGAA TTTTTGGTGG CATTTTGACC TATGCCCATT TGCCCCATTT CAATTGTTTC
GATCCACAAT TCATAGACGA TTCAGATGTG CACAAGATAG ACATAGCCAT TGTCGGAGCT
CCATTTGACA CCGGAGTCTC TTTCAGACCA GGAGCTCGAT TTGGTCCCGA AGCAATCAGG
AGATCGGCGA GAAGAATTGG AGGTGCTCAT GTCAGAACCA CCAAGAAGAG AAAGAACTAC
CCAATTGACC CTTATGATGA GACTACTCAC AATTACAGCA TTGTCGATTG TGGAGATGTA
GCCATGTCAC CTTTTGACAA CAGAATCGCC TTGAATCAGT TATACCGTGG ACAGAGAGTG
ATACACAGGC ATAAAACCAA CATTAACTTG GTCCCAAAGA TCATCACTTT GGGTGGTGAT
CACACTATCA CCTTGATGGC ATTGAAATCT GTTTCTGAGC AAATAGGAAA ACCGGTACAA
ATTATCCACT TCGATTCCCA CATTGATACA TGGAACCCTA AGGTTCTAGG AGGTGGAATC
ACCAACTACA TGTCTCTCAA TCACGGTACA TTCTTGCACT ACGCTCATGA ACAAGGGTAT
ATTGTAGATG GTGGTAATTA TCATGTTGGA ATCAGAGCTC CGTACATAGA CAATGTCTAC
GATGGCCAGC ATGATATAGA GTGTGGTTTC AACATCATCA GTGCAAATGA TGTTGACAAG
TTGGGAGTGT CTGGGATTAT CAGGAAATTG AAACAAGCAG TCAAGACAAA CCCTGTTTAT
ATTTCCGTAG ATATCGACGT CTTGGATCCA GCTACGGCTC CAGGAACGGG AACTATGGAA
ATCGGAGGCT TGACAGGAAG AGAGTTGTTG AGCATCCTTG ACGGGTTGAA GGGTATTGAA
TTGGTTGGAG CAGATGTTGT AGAGGTATCT CCTCCATACG ATACAAACTC AGAAATTACT
AGTTTGGCTG CTACTTCAGT TGTTGACTCG CTCTTGAAAT TGATGGTGGT GAAAGGTGTA
GAACAGTGA
 
Protein sequence
MKMQSKVNLP SDDDTSDILM DQGIFGGILT YAHLPHFNCF DPQFIDDSDV HKIDIAIVGA 
PFDTGVSFRP GARFGPEAIR RSARRIGGAH VRTTKKRKNY PIDPYDETTH NYSIVDCGDV
AMSPFDNRIA LNQLYRGQRV IHRHKTNINL VPKIITLGGD HTITLMALKS VSEQIGKPVQ
IIHFDSHIDT WNPKVLGGGI TNYMSLNHGT FLHYAHEQGY IVDGGNYHVG IRAPYIDNVY
DGQHDIECGF NIISANDVDK LGVSGIIRKL KQAVKTNPVY ISVDIDVLDP ATAPGTGTME
IGGLTGRELL SILDGLKGIE LVGADVVEVS PPYDTNSEIT SLAATSVVDS LLKLMVVKGV
EQ