| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54822 |
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| Symbol | |
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| ID | 4837672 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1096880 |
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| End bp | 1101637 |
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| Gene Length | 4758 bp |
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| Protein Length | 1549 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388987 |
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| Product | predicted protein |
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| Protein accession | XP_001382989 |
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| Protein GI | 150864248 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components
[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.445899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CGTCCATTAT ACGATCCCCA CCAGAATACC ATCAACCCAT GCTTTCTAGG ATCTGTCAAT
GTGGTGTTCT CTGCCATTGT AGGTCTCATT GCCGTTTTCC AGATATTCAA CCTACTCTGG
AACAATAAGC ATGGTCCCTA CAGAATCAAA TATTCGTTCG GTTCTCCTTT TGGGCTCAAA
AGCGTTGGTA TTTACCATCT TGTGAAAATT AACTCAATTA TATTGCAATT CGTGTTGATC
TTGCTGTTGA CCATATTGAC ATACACAGGT GAAAACGTCA AGTCGTTCGG CTTAGTATTG
AATACTTTCT TACTCGCAGC CGTAGTGCTA CCATTGCATA TCGTGGAAGT AACCAGATCT
GTGATACCCA GTGCCTCCTT GTTGCTCTAC TGGGTTGGTT CCACTTTCTA CGACTTTGTC
GTCGTACTCC AGGACTCTTT CTCTACACAA AAGGTTTACA TTCCCTCAGA GAATAAACCT
CTAGCTTCTA TCATTTACGT GCTAGAACTA GCCATTTTAT TGAATTCTGC TTTGGTTCTT
GTATTTGAGC TTTCTCTCTA CAAGCCATCG GTGGAATTGG TTGACTACTT CAACTTAAAC
GACTGGGATG TCTCTTCAGT AAGAAACTTC TTCTCAGAAT TGGGGTTCTT CTGGTTAAGA
GATACCATCC AAGACATCCA CGAAACAAAC ACAGTTTCCT TTGATGAAAT TCCTCCAAGT
CCTATCGTGT TGAAGAATGT AGTCACATAC GCTAAGTTGT ACAAATATTT CAATGCTTCA
AAACTTAAAG CTGAGCAGAA GAGAGACAGA AAACTCAAAA AAATCGCCAA TCCTAGCGAA
GATGATTTGA AACTCCCTCA CTTCTCAATG TTCTTGCTCT TATTCAAAAT TCACTGGGCT
ATATTGTTAA GAGGGTTTAT TGTCGATTCA TTGGAAATGA TTTTCAGTTT TGGTCAAGCT
TTCTTGTTCC AAAGATTCAT CTTATACTTC ACCAATGCAA GCTCTGCAAA CACGGAAAAC
GGGCAAGGCG AACCTCTTAT TGTAGGCTTT GCTATCGCTA CTGCCATTTT CTTTTGTGCT
GTAGGTAGAT TCATCAGTTT CAACCAGTTC TTCGTTTGTT ACTTTGTTGT TAGAAGTAAG
TTGCAATCGT CTTTAATCGG GTTCGTCTAC AACAAGGCAA TTCGCTTATC ACAGGAATCC
AGAAAGGGCA AATCTACTGG TGATATTGTC AACAATCTTT CTGTAGATGT TTTTGAAGTC
AGTGAATTAC CCAGACTTGT TGAAGCTGCC ACAATGCCAT TCAGATTAGT TTTCTCATTG
CTTGCTTTAT ACAAAATTAT GGGTCCCGCA AGTTATTCGG GTTTCGTTGT CGCTGCCATC
TTAGTGCCTA TCAGTAGTAA AGTGAGTTCT TCTATCTGGA CCCTTTACAA TGAAAGTATG
AAGATAAGAG ATGAAAGAAC CCGCTTGACA ACTGAAATTT TGAACTCCAT CAAAAGTATC
AAGTTATACT CGTGGGAGAA GCCAATGTTG AGTAGATTAT TCTCCATCAG AAACGACCGT
GAATTAGTAT ATGCCAAGAA GATTGGAATT TTCAATGCTG CTGCCACCTT CTTATGGTCT
TGTATCCCAT TCATGGTGTC TTGTGCTTGT TTGGTAACAT TTGCAGTTCT TTCCAAGGCT
CCGTTAGTTC CATCTGTTGT CTTCCCTGCT TTGACCTTAT TCGAGATTTT GGCGGAGCCA
ATTTTACTTC TTCCCGATCT CTTTTCTCAA GTAGTGGAAA TGAATGTTTC CTTGAAGAGA
TTGAGAGAGT TGTTCTTATT GGAGGAGTTG GACGCTGATA TCATTGAAAG AACTGACAAT
TCCCTTTCCA AAAATGACAG CGCTATTGAA ATTAAAAATT CGACATTCCT TTGGAGCACT
GAACCAAAAA TTGAAAGCAC TGATCCAGAA AGCGTCGTTG AATCTGAGGG CCCTTCAAAT
ATTGCTCTTG ATAACATTAA CTTTGAAGCC AAAAAGGGAC AGTTGACTTG CGTAGTGGGA
AGAGTTGGAA GTGGAAAGAC TACCCTTCTC AGATCAATCC TTGGAGAAGT CCCTGCTCAA
AAGAATGCTG ATACTTCAAT CAAAGTCAAT GGCTCAATTG CATACTGTGC TCAAAGTCCT
TGGATCATGA ATGCTACCGT AAAGGCTAAC ATTTTGTTTG GATGCAAATT TAACAAGGTC
TTTTACGATC GTACAGTTGA AGCTTGTCAA TTGACGAGCG ACTTTGAAGT ATTACCAGAT
GGTGACAGAA CTGTCGTTGG TGAAAAGGGT ATTTCCTTGA GTGGTGGTCA AAAGGCAAGA
ATTGCCCTCG CAAGAGCCGT TTACTCAAGA GCCGATGTTT GCATTCTTGA TGATGTTTTA
TCTGCTGTTG ATGCTCATGT TGGTAAGAAC ATTACTAAGT TAGTTTTGGG ACCCGAAGGT
CTTTTGGCAT CTAAAACTGT GGTTTTGGCA ACCAACGCTG TTAATGTCTT GCACCAAGCC
CATGAAATTG TTCTCTTGAA GAAAGGGAAA ATTACTGAAA GGGGAAACTA TGACGAGGTT
ATGGCCAGAA AATCCGATTT GGCTGCTTTA ATCGAAGAAT ATGGTAAAAA GGAACACGAA
GAAGAAGACG AAGAAGATGA TTCTAAAGAT GATATTAAAG GAAATGCGGA TGTTCATGTG
GCATCAACAG ATATAAACTC CTCACAATCC AGTGATGAAA TTGTAAAGTA TTCTCCAGAA
AATGAAACTG CCGTCGAAGA TGACGAAGAA CAATTTGAAC ACCTAGAAAG AATGGAAACA
AGAACAACCC TTCGAAGAGC TAGTTTTGTT TCCTTCAGCC ATAATTATGA GGATGATGAA
GACGAAACAG TTGTTAAACG AACAGGTCAA GAAGCTGAAG TAGGGGCTCA AGGTGAAGTA
AAATTGGGAG TTTACTTGGA ATACTTCAAG GCCTGCAATT ATTCATATGT TGCACTTTAC
GTCATCTGTT TTGCTTGTAA TATAACTGCT AGTATTCTGG CCAATTATGT ATTGAAGACA
TGGTCAGAGC AGAATATGAG TGCCGGACAT AATGTCAATC CTATTTTGTT CTTGTCCTTC
TATGCAACCT TAGGTATTTC TGGTGGATTC TTCACTTTGT TGGGTGCTAT GGTTATATGG
ACTTACTGTG TTGTTAGTGG TTCCAAGTAT TTCCACGATA AAATGGCCAG AAGCGTGTTA
AGGTCACCAA TGTCCTTCTT TGAAACAACT CCAACCGGTC GTATTATTAA TAGATTTGCC
GACGATATCA ATGTTCTTGA TCAGCAGATT ATTTGGTCTT GTATGGGTGC GGTTGAACAT
GTCCTTCAGG CATTTGGTTT AATTTCAGTC ATTGTATACA ATCTTCCACT CATGTTTATT
ATCATTGCTG TCTTGCTTTA CGTTTACAAC CAAGTTAGAG GATATTTTAT TCCATCTTCG
AGAGAACTTA AGAGATTAGC AAGTGCCAAA AAGAGTCCTG TCTTCTCACA CTTGCAGGAG
TCTGTTAGTG GAGCTGAAAC TATCAGAGCT TATGGCCAAG AAGAAAGGTT CAAGTTCCAG
AACACGAACA ATGTTGACAG TTTGGTTCGT GTAACATTTA CTAACCTTTG CTGCAATAGA
TGGTTGTCCA TGAGGTTGCA GAGTATATCT GCAGTTATAG TGTATGCCTG TACGTTACTC
ATTTTGGCTT CTTTAGGTGC CAAGAAGCAA TTGAGTTCTG GTTTGGTTGG TTTCATTATG
ATTAATGCCT TGAGTATCAC TGGTGTATTG AATGCTATTA TTAGATATTG GGCTGATATT
GAAACAAAAT CGGTTTCTAT TGAAAGAATC ATTGAATATT GCAACTTGAC CCCAGAAGCT
GAAGAGGTAG TCGAGGGAAA TAGACCTCCT CAAGACTGGC CAGCAACTGG AGCTATCTCT
TTTAAGAATT ACACAACCAG ATATAGAAAG AACTTGGATC CAGTTTTGAA TGACATCACC
ATCGACATTA AACCACAGGA AAAGATTGGT ATTGTCGGCA GAACTGGAGC TGGTAAGTCA
ACTCTTTCAT TAGCAATCTT CAGAATTATC GAAGCAACTG GGGGCCATAT CGAAATCGAT
GGTATAAATA CCAGTGAAAT TGGTCTCTAC GATTTACGTC ATAAACTTAA TATTATCCCT
CAGGATGCTC ATGCAATTGA GGGATCTATC AGACTGAATT TGGATCCTTT TGACGAACAT
AGTGATGACG AACTCTGGAA AGTTTTGGAA TTAGCACACT TGAAAGAACA CGTCCAATCC
ATGAAAACGA AGAAGGAAGT AGACGAAGAT GACAAGAAAG AAGAAACCTC CGAGAATGCT
GATGACTTCG ATGTTGGACT TGCTGCTAAA GTGCAAGAAG GTGGCTCCAA CTTATCTTCG
GGCCAAAGAC AACTTTTGGC CCTTGCAAGA TCCTTATTAA ATCCTTCAAG GGTTCTTATT
TTAGATGAGG CTACTGCTGC TGTTGACGTA CAGACAGATA AGATTATCCA GGAAACGATC
AGATCAGAAT TTAACAACAA GACTATTTTG ACCATTGCTC ACAGACTTGA AACCATCCTC
GATAGTGATA GAGTTCTTGT TTTGGATAGA GGTCAAGTTA AGGAATTCGA CTCTCCAAAG
GCATTGTTGT CGGATGAATC TTCAATCTTC TACTCCTTGT GCAAAGAAGG GGGATATCTC
AAAGATATTG ACTTATAG
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| Protein sequence | RPLYDPHQNT INPCFLGSVN VVFSAIVGLI AVFQIFNLLW NNKHGPYRIK YSFGSPFGLK
SVGIYHLVKI NSIILQFVLI LSLTILTYTG ENVKSFGLVL NTFLLAAVVL PLHIVEVTRS
VIPSASLLLY WVGSTFYDFV VVLQDSFSTQ KVYIPSENKP LASIIYVLEL AILLNSALVL
VFELSLYKPS VELVDYFNLN DWDVSSVRNF FSELGFFWLR DTIQDIHETN TVSFDEIPPS
PIVDRKLKKI ANPSEDDLKL PHFSMFLLLF KIHWAILLRG FIVDSLEMIF SFGQAFLFQR
FILYFTNASS ANTENGQGEP LIVGFAIATA IFFCAVGRFI SFNQFFVCYF VVRSKLQSSL
IGFVYNKAIR LSQESRKGKS TGDIVNNLSV DVFEVSELPR LVEAATMPFR LVFSLLALYK
IMGPASYSGF VVAAILVPIS SKVSSSIWTL YNESMKIRDE RTRLTTEILN SIKSIKLYSW
EKPMLSRLFS IRNDRELVYA KKIGIFNAAA TFLWSCIPFM VSCACLVTFA VLSKAPLVPS
VVFPALTLFE ILAEPILLLP DLFSQVVEMN VSLKRLRELF LLEELDADII ERTDNSLSKN
DSAIEIKNST FLWSTEPKIE STDPESVVES EGPSNIALDN INFEAKKGQL TCVVGRVGSG
KTTLLRSILG EVPAQKNADT SIKVNGSIAY CAQSPWIMNA TVKANILFGC KFNKVFYDRT
VEACQLTSDF EVLPDGDRTV VGEKGISLSG GQKARIALAR AVYSRADVCI LDDVLSAVDA
HVGKNITKLV LGPEGLLASK TVVLATNAVN VLHQAHEIVL LKKGKITERG NYDEVMARKS
DLAALIEEYD DSKDDIKGNA DVHVASTDIN SSQSSDEIVK YSPENETAVE DDEEQFEHLE
RMETRTTLRR ASFVSFSHNY EDDEDETVVK RTGQEAEVGA QGEVKLGVYL EYFKACNYSY
VALYVICFAC NITASISANY VLKTWSEQNM SAGHNVNPIL FLSFYATLGI SGGFFTLLGA
MVIWTYCVVS GSKYFHDKMA RSVLRSPMSF FETTPTGRII NRFADDINVL DQQIIWSCMG
AVEHVLQAFG LISVIVYNLP LMFIIIAVLL YVYNQVRGYF IPSSRELKRL ASAKKSPVFS
HLQESVSGAE TIRAYGQEER FKFQNTNNVD SLVRVTFTNL CCNRWLSMRL QSISAVIVYA
CTLLILASLG AKKQLSSGLV GFIMINALSI TGVLNAIIRY WADIETKSVS IERIIEYCNL
TPEAEEVVEG NRPPQDWPAT GAISFKNYTT RYRKNLDPVL NDITIDIKPQ EKIGIVGRTG
AGKSTLSLAI FRIIEATGGH IEIDGINTSE IGLYDLRHKL NIIPQDAHAI EGSIRSNLDP
FDEHSDDELW KVLELAHLKE HVQSMKTKKE VDEDDKKEET SENADDFDVG LAAKVQEGGS
NLSSGQRQLL ALARSLLNPS RVLILDEATA AVDVQTDKII QETIRSEFNN KTILTIAHRL
ETILDSDRVL VLDRGQVKEF DSPKALLSDE SSIFYSLCKE GGYLKDIDL
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