| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54788 |
|---|
| Symbol | FAD3 |
|---|
| ID | 4836643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 2698088 |
|---|
| End bp | 2699203 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640387958 |
|---|
| Product | fatty acid desaturase (DSD1) |
|---|
| Protein accession | XP_001382752 |
|---|
| Protein GI | 126132454 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3239] Fatty acid desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.282739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCGA TCAAACACAG AGTGTCCAAC CAGACCTACA CTTTCGTTAC TCCTGCGGCC
GATGCTCCCA TAGAAGTGCT CAATGAATTC TACTGGACCA AAGAAGCTGA ACCTCACGTT
CTTCGTCGTA AGCAGATCTT GGCCAAATAT CCAGAAGTCG CCAAGCTTAC TGGTTATGAG
ACCAAAACCA AATGGTATGT CCTAGGAGTT GTGTTGCTTC AGTTTTTAGT TGCTTATTAC
TTGAGGGATA CTAGTCCTCT TGCCTGGAAG TTCATGGCGT TAGCTTACAT AATTGGAGCT
ACTTCCAACC AGGCCCTCTT TCTTGCTATT CACGAGTTGT CCCATAACTT GTTGTTCAAG
AAACCGCTTC ACAATAAGAT TTTTGCCATA TTCGCCAATC TCCCTATTGG AGTTCCGTAC
TCGGCGTCAT TCCAGCCCTA TCATCAATTG CATCACAAGT TCATGGGAGA CCATTACCTC
GACACAGACT TACCTACAAA GTTTGAAGCT ATGTTTCTCT CTAACTTACT CGGAAAAGTT
CTTTTCGCTA CATTCCAGAT CTTCTTCTAT GCCTTAAGAC CAATGTTCAT CACGCAGATT
CAATTCACTT ACATACACTT GTTGAACATT GTAGTTCAGA TTGCGACAGA TTACGTTATG
GTTCAATCGT GGGGCTGGAA TGCACTTGCA TACTTCATCA TGAGTTCGTT CTTGGCTGGA
TCTTTGCATC CTTGTGCTGG CCACTTCATC GCTGAACACT ATGTGTTGAA CGAGAATAAT
AAGCCCAGAC AGGAGCGCAA GGATGGAATC ACTATCAGCA AGGAGTTGCT TCCTGCAGAG
ACGTATTCAT ACTACGGCTC GTTGAACCTC TTGACCTGGA ATGTAGGCTA TCATAACGAG
CACCACGACT TCCCCTACAT TGCCTGGACG AAGTTGCCGC AACTTAGAGA AATAGCTTCC
GAGTTCTACG ACCCCTTGCC CCAAGTCACT TCTTGGTGCG GAGTCATTTG GTGTTTTATG
TTCAACGACG TCAACACGTT GTGGAACAGA GTAAGAAGAA CAGGCAAGGA AAGACACGGT
TCCAGAATTA GAAATCTTGA TCAGAACCAA AGCTGA
|
|---|
| Protein sequence | MESIKHRVSN QTYTFVTPAA DAPIEVLNEF YWTKEAEPHV LRRKQILAKY PEVAKLTGYE
TKTKWYVLGV VLLQFLVAYY LRDTSPLAWK FMALAYIIGA TSNQALFLAI HELSHNLLFK
KPLHNKIFAI FANLPIGVPY SASFQPYHQL HHKFMGDHYL DTDLPTKFEA MFLSNLLGKV
LFATFQIFFY ALRPMFITQI QFTYIHLLNI VVQIATDYVM VQSWGWNALA YFIMSSFLAG
SLHPCAGHFI AEHYVLNENN KPRQERKDGI TISKELLPAE TYSYYGSLNL LTWNVGYHNE
HHDFPYIAWT KLPQLREIAS EFYDPLPQVT SWCGVIWCFM FNDVNTLWNR VRRTGKERHG
SRIRNLDQNQ S
|
|---|
| |