Gene PICST_42412 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_42412 
Symbol 
ID4836906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp643689 
End bp644600 
Gene Length912 bp 
Protein Length303 aa 
Translation table12 
GC content43% 
IMG OID640388221 
Productpredicted protein 
Protein accessionXP_001382362 
Protein GI150863771 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0428] Predicted divalent heavy-metal cations transporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.107357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTCTG GTACCTGGTG GCAGCTTCTT TTGCTTGTCT CCATAATGGG AGTATCTGCA 
TTTGTGGGAG GTTTTGTTCC CTTGAGACTT CAGCTTTCTC CGTCTCATTT GAATGCTATC
TCCATCTTCA GCGTTGGAAT CTTGATAGGA ACTTCTTTGG TTCTAGTGAT CCCTGAAGGT
GTAGCGACTC TATATGGTGC CGTTCTGGAT GGCACTTCTC AATACTTGTC TCAGATCATG
GGCCTTTCCC TATTGGCTGG ATTTGCCATG ATGTATATTC TTGACAATCT CCTGGCTATC
TTAGCATTCT GTAGCATCCA AATGGATACT GCAGCTATTG TTGATCCATC TCAGCCGATC
ACAATATCTG TGTTGATGAG ATCCGTGGTG CGATCTTCGT TGACTTCTGG TCTCATTTTG
CATGCTTTGA CTGATGGAGT TTCACTTGGC TCTTCATTTG TCAAAGGAGA CTTGACATTT
GAAATCGTAT TCTTCGTAGC CATAATCATC CACAAACTAC CTACAGCTTT CAGTTTGTCA
ACTATACTCT TGAGAGAAGG TCAGATGCCA AAAGTCATTC TCATCCATTT GGCTCTTTTC
TCTATCCTGA CCCCATTGAG TGCTATTATT ACGTTTGTGA TCATTAAGCT GACATCTCTG
GATAACGAGT TGGTGGTAGG AATCATGTTC TTATTCTCAG CTGGCACTTT TCTTTACGTT
GTAAGCCATG TCATGACTGA AATCTATAGT GTTGAAGACG AGAAGTCAGA ATTTACGTCA
GTTCCAGCAA CATCGGATAG CGAAGCTACA GTGGTCCACC ATCTGGCCAA TTCTCTGAAT
GGAACAGAAG TAGCTTTGAC TTTGGCTGGT ATGGCCATTA CAACACTTCT CAGTTTCATC
GATCATGAAT AG
 
Protein sequence
MASGTWWQLL LLVSIMGVSA FVGGFVPLRL QLSPSHLNAI SIFSVGILIG TSLVLVIPEG 
VATLYGAVSD GTSQYLSQIM GLSLLAGFAM MYILDNLSAI LAFCSIQMDT AAIVDPSQPI
TISVLMRSVV RSSLTSGLIL HALTDGVSLG SSFVKGDLTF EIVFFVAIII HKLPTAFSLS
TILLREGQMP KVILIHLALF SISTPLSAII TFVIIKSTSS DNELVVGIMF LFSAGTFLYV
VSHVMTEIYS VEDEKSEFTS VPATSDSEAT VVHHSANSSN GTEVALTLAG MAITTLLSFI
DHE