| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_30251 |
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| Symbol | YCF1 |
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| ID | 4837318 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 2360006 |
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| End bp | 2365338 |
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| Gene Length | 5333 bp |
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| Protein Length | 1640 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640388633 |
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| Product | Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily |
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| Protein accession | XP_001383209 |
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| Protein GI | 150864414 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.126285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.630881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATCG GTGAACCTGG GGTAGGTCGG ATTGACCAGG CTATAGGCGT ACTGCACACG
AGTCTGTTCA TGACAATCAC CTTCGGTCCT GACACTTGGA AGTCTCAATG GGGTAAACAT
CGTAAGTCTA TCCCTTTCTG CTACGCGTGC TGTTGTCGAT GCGCTTCACC CCTCCGCCAG
CTTCCATACA CTATCTGTCG AAGCCCTTAT GTAGGACTGT AGAACTGATT GTATCTCGTG
TGCCTTATCA ACTGTGATTG TTAATCGTAC CGATGGCATA CAGGATGGCT GCGTCTTTGA
AGCCGTACCG GACATGGGCA ACTCAAATTA CAAGAGTGGC GATAACCAAA AGGCACAACT
GTACTTTATA CCAAACTATT TTTTGCATCT ATCACCAGTT TTCAACACGA TTGCTTATTT
GCTATTTTTC TCTCTTCAGG GGTGTTGAGC TGGTTTTTCG TTAATTGGAA GCAGTCTGTC
AATTTTTCAG ATACTTATCC TGCCGTGTTG GATATTTCGT AAGTTATCAC CTAATTGTCG
GAATTCTTGC TTCTCCTATC TTCCACGCTA TCAACGCCGC TGTTTTGTTT TTACGCTAAC
AGTAGAGCAG CATGGACTCA ATCACGCATT TGTGGTTGCT GAAACTGAAC CCGCTAGGAT
CTGTTCACAA TGTCGGCCTA GAGTCGTTCT ACGAGCTAGA ACTGCCAGAT TGGACTTCTC
CATTGTACTC GCCTACTGGA AACGCGTTGA ATCCACCTTT CGTCAAGAAA GTTTCTTTGT
ATGTGAATTA CTTCTTCCTC GCCTGGCTTA TCTTGCAACT CGTGGCAGCG CTTTTCGCTC
CTACAAAGAA ACTCACTAAG ACATACTCGC AAATAGGCTT TCCCAAAAAA GTTGCTGTGA
TAACTTTGCA AGCTTTGGCC ATATTAGGCA TCTACGTTCT GTCTCATGAC ATCAATATTA
TCGTCTATTT TGCTACTTTG CTCTTGTTGG TACTCCCATT GCAATTGCTT GCTCCCAGAA
AATCGCCAAT TTCGTATGCT GCGGTCTTGT TCTTCTGGTT ACTGTCAATT GTCTTGTTTG
TAGTTCCAAT TGTTCAAGAC ACTTTTTCGA CTATCACGAT CTACCGAACT TCGATCTTCA
CGTATGTTTG TGAAATATCT GTTGTCTTGA CTTCGAATGT GTTGTTATTT CTCGATAACG
CCGATTACCA GGTCTTATTT GAACAGGAAA CAGACCCTTA CAACATCTAC AATATTTTGT
ACTTTTTGAC CTTCTACTGG ATCCAGCCTC TCATCTCCAA GGCTTATACT AAGAACGACC
TTACGAAAGA TGAAGTGCCA TATACTTCGG CTCATTTATC TTGCGACGTT ACTCTAGCAA
ACCTATCGGA GAATTGGGAA GACGAGAAAA AGGCAGCTGC CAAAAAAAGC TGGTTCATTC
CTGAGATGTT CAGATCTGGT CCTTCACTAA TGACAGCTAT CTTCAAATCG TTCTTGTCTT
ACTTTGTGCT TAATCTTAGT CTTGATGTTT TCGAGACTAT CTTAACCTTT TCTCAACCCA
TTGTATTACG TCAGTTGATC ATTTTCTTCC AAGATCGCAG CATCGCGGAA GAAAAACCTC
CTATCATCGT TGGTTATGGG CTTGCAATTT TGCTATATGC CATTAACTGT ACAAGGTTCT
TCACATTTAA TCAAGCATAC CAGTACCAGT ACGAGTCTAT GTATGCTGTG CATTCGTCGC
TTGTTTCAAT TATTCATGCC AAATCGTTAA GATTATCCCC TGATTCCAAG AAAGCAAAGT
CCACTGGCGA TATCATAAAC CATATCTCAG TTGATACTGA CGTTATCAAA GGTTTCTTCT
ATGGATTGCA GGACTTTGTT AGTTCACCTT TGAAATTGAC TTTCTGTTTG GTTTCCTTGT
ATAGGCTTCT AGGCAATGCT ACCTGGGCAG GGTTATTAGG TTTCTTGGTG GTACTACCTT
TTTCAACCGT TTTGTTCACT TGGTTTGCCA ACTGCCAAAA GAGAATGATG AAATTCAAGG
ATGATAGAAC CAACTTGACA AACGACATTC TCACGTCCAT CAAGAACATC AAGTTGTATT
CGTGGGAAAA GCCAATGTTG AAAAGGTTGA CAGACATTAG AGACTTGAAG GAATTGAATG
AACTCAGAAA GATGGGAACC ATTATGGCTG CTGTTATGTT TATTTGGGGC TGTGTTCCAT
TCTTGATCAG TTGTTCAGTT TACACAGCTT TCACTCTCTT CTACGACATT CCTTTAACTG
CAGACATTGT TTTCCCATCA TTAGTCCTCT TTGATCTTCT CTCTGAGCCA TTAATGCAAT
TTCCACACTT GATTTCAAAT TACTCTCGTG CTGCAGTTTC CTTTGGTAGA ATTAGTGATT
TTCTCTTACT TGACGAGCTT GAATTGGAAA ATAGCAAAAC TTATAGCCAC AAACTTGACT
CACCTACTAA CTCGACTCCA GTTAAGCTTG AAAATGTCAC TTTGTTGTGG TCTACAAAGG
AGAACGCAAA CAAAAAGTTC CACGATGAGG AGGCTCAGGT TGAAGAAACA CATAGCAATA
TTGCTTTGTC TAACATTAAC ATTGCTGCCG AGGCAGGAAA ATTGACATGT ATTGTAGGAA
AGGTTGGAAG TGGTAAAACT ACCCTTATCA GATCTATCTT GGGTGAAATT CCTATTCATA
CACAACCTTA TTCTGATGAT TCTGAGTATG TATTTCCTAG GGTTGAAATT AATGGTGCAA
TCGCTTACTG TCCCCAAACT CCATGGATTT TGGATGGAAC AGTCAAGGAG AACATTTTGT
TCGGCTACAG ATATGATGCT GCAAACTACA AGAAGACAGT AGAAGTCTGT GAATTAGTCA
GTGATTTCCA ATCCTTGGCT GATGGTGACA AGACTGTTGT AGGTGAAAAG GGTATTTCTT
TGAGTGGTGG ACAGAAAGCT AGAATTTCGT TAGCTCGTGC TGTTTACTCA GGGGCTGATA
TCTATCTTTT AGATGACGTG CTTTCTGCTG TAGATGCACA TGTTGGAAAG AAAATCATTG
ACAATGTGTT AGGTAGAAAT GGTATTCTTG CTTCAAAAAC AGTCATTTTG GCTACGAACT
CTGTTCACGT TTTACATGAA GCTCACAACA TTTACATGTT GAAGAATGGA ACCATTAGCG
AGAGCGGTGA CTACGATACA GTCATGGAAA GAAAGTCTGA TTTGGCTCAA TTGTTGCAGG
AGTTCGGAAA AACAAAGAAG TCCCAAGAAA CCGAAACTGA AACTGAAACT GAAATTGAAG
AAGTTAGTGA GCAAGCTCAC TCGAGTACCA AACGTCGGGA AATAGACCCA GTTGATGTTG
AAGAGGAAAT AATCGAGTAT GTTTCTGAGA GTATTGATCC CGGTCAAGTA AACACTGGCG
GCTTTCGTCG TGGAAGTTTG GTTTCATTTG GACACGAATA TACAGATGAC GAAGAAGATG
ATACAGCAAG AAAAACTGGA AAAACGGAAG AGAAGCTTGG AAAAGGTCAA GTTAAGAGAG
ATGCTATTTT GAGTTATCTC AGAGCAGCTA GTTACAAGTA CATCATACTC TACTTGGTTT
TGTCTATTGG TACTTACTTA TGTACCATGT TGGATAAGAT CGTTTTGACA AATTGGTCAG
AGAAGAATAG TGCTGCTGGA GACACTGTCA ATCCACACCT TTACTTAACT CTTTATGGAA
TTGTTGGTAT TCTGGGTGGG GGTTTTGTAT TGATTAGTTC AGTTATTGTC TGGACATTCT
GTATTGTTCC GGCTTCATCA TTTTTCCACA CTAGGTTAGC CAAATCGGTC ATGGCTTCTC
CAATGTCTTT TTTTGAGACG ACTCCAGTGG GAAGAATTTT GAATCGTTTC ACAGAAGATA
TTGGAAGTCT TGATATGGAA ATTCCATGGG TTTTGATTAT GTTGGCTCTG ACGTTTCTTA
ATGCGTTCAT TACTTTTGGT GTTATCATTT ACGCAGTACC AATTATCTTG TTCTTCCTTA
TACCCATGTC ATTTATTTAC AATTACATTC GCCAACTTTA CATTCCTGCT TCAAGAGACC
TAAAAAGAAT CGAGAGTGCT TCCAAGAGTC CTATTATCTC TTCTATTCAG GAGTCGCTTA
ATGGCGCTGA CACGATCAAA GCTTTCAACC AAGAAGAAAG ATTTACTCAT ATGACAAGGG
GAGCGGTGGA TGAGTGTATT TCTGTAGGTT TGATTATCCT GGGAATTCAG AGATGGTTAT
CGATCAGATT GCAGTTCATT TCGTCTACAA TTTTGTTCGT TACTGCCGCA TTGGCTGTTA
CATCTTTGAC TACCAGTGCT CCTATGAACC CCTCCGTCTT TGGTTTTGTC ATGTCGTACG
CCATGAATAT AGTCTATGTC TTGAATGCAA TCGTGAGAAC TTGGGCTGAA GCTGAAACTC
AGATTGTTGT GTTGGAAAGA CTCAATGAGT ATAGTGAACT TCCATCTGAG GCTCCAATGG
AGATCGAAGA CAAGAAGCCT GTGAAGAGCT GGCCGGAACA CGGTACAATC TCGTTCAACA
ATTATTCTGT GAGATATAGA GAGAACTTAG ATCTCGTCCT TAAAGGCATT AACATCAACA
TTAATGCCAA GGAAAAGATT GGTGTAGTGG GAAGAACTGG AGCTGGTAAG TCCTCGCTTA
CTTTAGCATT ATTCAGAATC ATTGAAGCAG CGTCAGGTAA TATTTCAATC GATGGAGTCA
ATACCAATGA AATCGGATTA TACGATTTAA GACGTCACCT TATGATTATT CCTCAAGAGT
CTAGTTCTTT CAGAGCTTCT GTGAGAGAAA ACTTGGATCC GTTTGGTGAA CATTCAGACG
AACAATTATG GAAAGTTTTG GAAACTGCTC ACTTGAAAGA GCACGTAGAA AAGATGACAA
CAGAACCAAC CGAGCAGGAG AAGAAAGAAA GTAAAAATGC AGACGAGTTA GGAACTTCCA
GAGGCTTGGA TGCCAAGGTA GCTGAAAATG GCGCTAATCT TTCAGCTGGT CAGAAGCAGT
TGTTGTCTTT AGCCAGAGCA CTTCTTCACG AGTCCAGTAA GATCTTGGTA CTCGACGAAG
CAACAGCTGC TGTGGATGTA CAAACTGATA AAATCATCCA ACAGACTATC AGAGAGGAGT
TCAAAGACAA GACAATCATT ACCATCGCTC ATAGATTGAA CACTATTATG GACAGTGACA
GGGTCTTGGT TTTAGACAAG GGTGAAGTTA AAGAATTTGA TACACCAGAC AAATTGAAGG
AGAACAAGGA TGGTATCTTC TATTCCCTTT GCAAGGAAGG TGGTTATTTG TAA
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| Protein sequence | MTIGEPGVGR IDQAIGVSHT SSFMTITFGP DTWKSQWGKH RVLSWFFVNW KQSVNFSDTY
PAVLDISMDS ITHLWLSKSN PLGSVHNVGL ESFYELESPD WTSPLYSPTG NALNPPFVKK
VSLYVNYFFL AWLILQLVAA LFAPTKKLTK TYSQIGFPKK VAVITLQALA ILGIYVSSHD
INIIVYFATL LLLVLPLQLL APRKSPISYA AVLFFWLSSI VLFVVPIVQD TFSTITIYRT
SIFTYVCEIS VVLTSNVLLF LDNADYQVLF EQETDPYNIY NILYFLTFYW IQPLISKAYT
KNDLTKDEVP YTSAHLSCDV TLANLSENWE DEKKAAAKKS WFIPEMFRSG PSLMTAIFKS
FLSYFVLNLS LDVFETILTF SQPIVLRQLI IFFQDRSIAE EKPPIIVGYG LAILLYAINC
TRFFTFNQAY QYQYESMYAV HSSLVSIIHA KSLRLSPDSK KAKSTGDIIN HISVDTDVIK
GFFYGLQDFV SSPLKLTFCL VSLYRLLGNA TWAGLLGFLV VLPFSTVLFT WFANCQKRMM
KFKDDRTNLT NDILTSIKNI KLYSWEKPML KRLTDIRDLK ELNELRKMGT IMAAVMFIWG
CVPFLISCSV YTAFTLFYDI PLTADIVFPS LVLFDLLSEP LMQFPHLISN YSRAAVSFGR
ISDFLLLDEL ELENSKTYSH KLDSPTNSTP VKLENVTLLW STKENANKKF HDEEAQVEET
HSNIALSNIN IAAEAGKLTC IVGKVGSGKT TLIRSILGEI PIHTQPYSDD SEYVFPRVEI
NGAIAYCPQT PWILDGTVKE NILFGYRYDA ANYKKTVEVC ELVSDFQSLA DGDKTVVGEK
GISLSGGQKA RISLARAVYS GADIYLLDDV LSAVDAHVGK KIIDNVLGRN GILASKTVIL
ATNSVHVLHE AHNIYMLKNG TISESGDYDT VMERKSDLAQ LLQEFGKTKK SQETETETET
EIEEVSEQAH SSTKRREIDP VDVEEEIIEY VSESIDPGQV NTGGFRRGSL VSFGHEYTDD
EEDDTARKTG KTEEKLGKGQ VKRDAILSYL RAASYKYIIL YLVLSIGTYL CTMLDKIVLT
NWSEKNSAAG DTVNPHLYLT LYGIVGISGG GFVLISSVIV WTFCIVPASS FFHTRLAKSV
MASPMSFFET TPVGRILNRF TEDIGSLDME IPWVLIMLAS TFLNAFITFG VIIYAVPIIL
FFLIPMSFIY NYIRQLYIPA SRDLKRIESA SKSPIISSIQ ESLNGADTIK AFNQEERFTH
MTRGAVDECI SVGLIISGIQ RWLSIRLQFI SSTILFVTAA LAVTSLTTSA PMNPSVFGFV
MSYAMNIVYV LNAIVRTWAE AETQIVVLER LNEYSELPSE APMEIEDKKP VKSWPEHGTI
SFNNYSVRYR ENLDLVLKGI NININAKEKI GVVGRTGAGK SSLTLALFRI IEAASGNISI
DGVNTNEIGL YDLRRHLMII PQESSSFRAS VRENLDPFGE HSDEQLWKVL ETAHLKEHVE
KMTTEPTEQE KKESKNADEL GTSRGLDAKV AENGANLSAG QKQLLSLARA LLHESSKILV
LDEATAAVDV QTDKIIQQTI REEFKDKTII TIAHRLNTIM DSDRVLVLDK GEVKEFDTPD
KLKENKDGIF YSLCKEGGYL
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