| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_3172 |
|---|
| Symbol | |
|---|
| ID | 4809622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3749248 |
|---|
| End bp | 3750663 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640108605 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001039560 |
|---|
| Protein GI | 125975650 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.534068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATAT CTGACATATT GGGAATGACG TTTAAAAACC TGATGAGAAG AAAAATCAGA
ACTCTGTTGA CCCTCACAGG TGTGTTGATT GGGACGACGT CCATTGCTGT AATGATGTCA
ATAGGGGTCG GGATGGACAG AGCCTTTGAA AGCCAGTTCA GCAGGATGGG AAGTCTGAAT
ACTATAACTG TCACCGGTTA TTATTACTCG GATGGAGGCA GTGATTATTA TTACTCGGTG
AGTGGCGGCA CTGGGAATCA AAAAAGACTT GACGACAAGG CAGTCAGGGA TTTTGAACAG
ATTGAAGGAG TCGAAGCTGT TATGCCGCAG CTTAGGGCAT ATCTCAAGTT TGTATCGGGA
AGGTATGTGG CTGGTGTGAA TGTTGTCGGA GTTGACCCGT CAAAAATGAG GATATTTGGA
TTTGAGGTGT CCGAGGGAAG GCTTTTAAAT GAAGATGACA AAGGAGCAAT TGTTTTTGGA
AGTCAGGTGC CTTACCATTT TTACAATCCC AGGGCCGTCG GAAGAAACAG GGTATTTATA
ATAGGAGGAA AAAATAGTGA AGACCCTCCT GTAAATGTGT TCGAAGACAG ACTTATTATG
ACTTTTGACT ATTTTTACGG GGAAAGCCAT GCAAATCAGC AGGGAAGTAT CAGAAGAAAG
ACCTACAAGG TTCAGGGAGT GGGAATTCTC AAAGAAAGCG GAGAATACAA CTATTCCGCT
TTTATCAACA TAGATTACCT GAAAAAGCTT ATGCAGGAAA ATGAAAGGGA GGAAAAGAGA
ATAGCCGCAT CTTTGGCGGC AGGCAATGAA GGCAGTGTTG GTTATTATAA CGCATCTTAC
AGCAGCAATA GGCTGTCTTC CCAGAATCCA ACCTATGAGA CGGTATTGGT AAAAGTTGCC
GACGTAAACA AGGTTGAAGA GGTGGAAAAC AAGATAAAAG AAATGGGATT TGGTGCTTAC
AGTCTTGCAG ATGCAAGGAA CGAGATGAAG AAGACGATGG CTGTGGTTCA GGCTATTTTG
GGAGCCATAG GAGCTATTTC TCTTCTTGTC GCATCTTTGG GAATAACCAA CACAATGTAT
ATGTCCATAT ATGAAAGAAC CAAGGAAATT GGCATATTCA AGGTTTTGGG CTGCTACCTT
AAAGACATCA GGGGAATGTT TCTCCTTGAG GCCGCTTTGA TAGGCTTTTT CGGAGGGACC
ATCGGAATAG GTTTCAGCTA TGCAATTTCT GCAATTATCA ATGCCATTGT TGCAGGAGCT
GTACCTAATA TGGAGGGAGC GTCAATATCA GTGATACCGC TGTGGCTGGC ATTGGCAGCA
TTGGCAGTGG CAGTGCTTGT AGGCCTTCTT GCAGGATATT TCCCTTCCAA ACGGGCTATG
AGGCTTAGCG CATTGGATGC AATAAGGAAT GAATAA
|
|---|
| Protein sequence | MRISDILGMT FKNLMRRKIR TLLTLTGVLI GTTSIAVMMS IGVGMDRAFE SQFSRMGSLN
TITVTGYYYS DGGSDYYYSV SGGTGNQKRL DDKAVRDFEQ IEGVEAVMPQ LRAYLKFVSG
RYVAGVNVVG VDPSKMRIFG FEVSEGRLLN EDDKGAIVFG SQVPYHFYNP RAVGRNRVFI
IGGKNSEDPP VNVFEDRLIM TFDYFYGESH ANQQGSIRRK TYKVQGVGIL KESGEYNYSA
FINIDYLKKL MQENEREEKR IAASLAAGNE GSVGYYNASY SSNRLSSQNP TYETVLVKVA
DVNKVEEVEN KIKEMGFGAY SLADARNEMK KTMAVVQAIL GAIGAISLLV ASLGITNTMY
MSIYERTKEI GIFKVLGCYL KDIRGMFLLE AALIGFFGGT IGIGFSYAIS AIINAIVAGA
VPNMEGASIS VIPLWLALAA LAVAVLVGLL AGYFPSKRAM RLSALDAIRN E
|
|---|
| |