Gene Cthe_3077 details

Gene Information

• Locus tag: Cthe_3077
• ID: 4809951
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 3619516
• End bp: 3625077
• Gene Length: 5562 bp
• Protein Length: 1853 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640108501
• Product: cellulosome anchoring protein, cohesin region
• Protein accession: YP_001039466
• Protein GI: 125975556

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAAAAG TCATCAGTAT GCTCTTAGTT GTGGCTATGC TGACGACGAT TTTTGCGGCG 
ATGATACCGC AGACAGTATC GGCGGCCACA ATGACAGTCG AGATCGGCAA AGTTACAGCA 
GCCGTTGGAT CAAAAGTAGA AATACCTATA ACCCTGAAAG GAGTGCCATC CAAAGGAATG 
GCCAATTGCG ACTTCGTATT GGGTTATGAT CCAAATGTGC TGGAAGTAAC AGAAGTAAAA 
CCAGGAAGCA TAATAAAAGA TCCGGATCCT AGCAAGAGCT TTGATAGCGC AATATATCCG 
GATCGAAAGA TGATTGTATT TCTGTTTGCA GAAGACAGTG GAAGAGGAAC GTATGCAATA 
ACTCAGGATG GAGTATTTGC AACAATTGTA GCCACTGTCA AATCAGCTGC AGCGGCACCG 
ATTACTTTGC TTGAAGTAGG TGCATTTGCG GACAACGATT TAGTAGAAAT AAGCACAACT 
TTTGTCGCGG GCGGAGTAAA TCTTGGTAGT TCCGTACCGA CAACACAGCC AAATGTTCCG 
TCAGACGGTG TGGTAGTAGA AATTGGCAAA GTTACGGGAT CTGTTGGAAC TACAGTTGAA 
ATACCTGTAT ATTTCAGAGG AGTTCCATCC AAAGGAATAG CAAACTGCGA CTTTGTGTTC 
AGATATGATC CGAATGTATT GGAAATTATA GGGATAGATC CCGGAGACAT AATAGTTGAC 
CCGAATCCTA CCAAGAGCTT TGATACTGCA ATATATCCTG ACAGAAAGAT AATAGTATTC 
CTGTTTGCGG AAGACAGCGG AACAGGAGCG TATGCAATAA CTAAAGACGG AGTATTTGCA 
AAAATAAGAG CAACTGTAAA ATCAAGTGCT CCGGGCTATA TTACTTTCGA CGAAGTAGGT 
GGATTTGCAG ATAATGACCT GGTAGAACAG AAGGTATCAT TTATAGACGG TGGTGTTAAC 
GTTGGCAATG CAACACCGAC CAAGGGAGCA ACACCAACAA ATACAGCTAC GCCGACAAAA 
TCAGCTACGG CTACGCCCAC CAGGCCATCG GTACCGACAA ACACACCGAC AAACACACCG 
GCAAATACAC CGGTATCAGG CAATTTGAAG GTTGAATTCT ACAACAGCAA TCCTTCAGAT 
ACTACTAACT CAATCAATCC TCAGTTCAAG GTTACTAATA CCGGAAGCAG TGCAATTGAT 
TTGTCCAAAC TCACATTGAG ATATTATTAT ACAGTAGACG GACAGAAAGA TCAGACCTTC 
TGGTGTGACC ATGCTGCAAT AATCGGCAGT AACGGCAGCT ACAACGGAAT TACTTCAAAT 
GTAAAAGGAA CATTTGTAAA AATGAGTTCC TCAACAAATA ACGCAGACAC CTACCTTGAA 
ATAAGCTTTA CAGGCGGAAC TCTTGAACCG GGTGCACATG TTCAGATACA AGGTAGATTT 
GCAAAGAATG ACTGGAGTAA CTATACACAG TCAAATGACT ACTCATTCAA GTCTGCTTCA 
CAGTTTGTTG AATGGGATCA GGTAACAGCA TACTTGAACG GTGTTCTTGT ATGGGGTAAA 
GAACCCGGTG GCAGTGTAGT ACCATCAACA CAGCCTGTAA CAACACCACC TGCAACAACA 
AAACCACCTG CAACAACAAA ACCACCTGCA ACAACAATAC CGCCGTCAGA TGATCCGAAT 
GCAATAAAGA TTAAGGTGGA CACAGTAAAT GCAAAACCGG GAGACACAGT AAATATACCT 
GTAAGATTCA GTGGTATACC ATCCAAGGGA ATAGCAAACT GTGACTTTGT ATACAGCTAT 
GACCCGAATG TACTTGAGAT AATAGAGATA AAACCGGGAG AATTGATAGT TGACCCGAAT 
CCTGACAAGA GCTTTGATAC TGCAGTATAT CCTGACAGAA AGATAATAGT ATTCCTGTTT 
GCAGAAGACA GCGGAACAGG AGCGTATGCA ATAACTAAAG ACGGAGTATT TGCTACGATA 
GTAGCGAAAG TAAAATCCGG AGCACCTAAC GGACTCAGTG TAATCAAATT TGTAGAAGTA 
GGCGGATTTG CGAACAATGA CCTTGTAGAA CAGAGGACAC AGTTCTTTGA CGGTGGAGTA 
AATGTTGGAG ATACAACAGT ACCTACAACA CCTACAACAC CTGTAACAAC ACCGACAGAT 
GATTCGAATG CAGTAAGGAT TAAGGTGGAC ACAGTAAATG CAAAACCGGG AGACACAGTA 
AGAATACCTG TAAGATTCAG CGGTATACCA TCCAAGGGAA TAGCAAACTG TGACTTTGTA 
TACAGCTATG ACCCGAATGT ACTTGAGATA ATAGAGATAG AACCGGGAGA CATAATAGTT 
GACCCGAATC CTGACAAGAG CTTTGATACT GCAGTATATC CTGACAGAAA GATAATAGTA 
TTCCTGTTTG CGGAAGACAG CGGAACAGGA GCGTATGCAA TAACTAAAGA CGGAGTATTT 
GCTACGATAG TAGCGAAAGT AAAATCCGGA GCACCTAACG GACTCAGTGT AATCAAATTT 
GTAGAAGTAG GCGGATTTGC GAACAATGAC CTTGTAGAAC AGAAGACACA GTTCTTTGAC 
GGTGGAGTAA ATGTTGGAGA TACAACAGAA CCTGCAACAC CTACAACACC TGTAACAACA 
CCGACAACAA CAGATGATCT GGATGCAGTA AGGATTAAAG TGGACACAGT AAATGCAAAA 
CCGGGAGACA CAGTAAGAAT ACCTGTAAGA TTCAGCGGTA TACCATCCAA GGGAATAGCA 
AACTGTGACT TTGTATACAG CTATGACCCG AATGTACTTG AGATAATAGA GATAGAACCG 
GGAGACATAA TAGTTGACCC GAATCCTGAC AAGAGCTTTG ATACTGCAGT ATATCCTGAC 
AGAAAGATAA TAGTATTCCT GTTTGCGGAA GACAGCGGAA CAGGAGCGTA TGCAATAACT 
AAAGACGGAG TATTTGCTAC GATAGTAGCG AAAGTAAAAT CCGGAGCACC TAACGGACTC 
AGTGTAATCA AATTTGTAGA AGTAGGCGGA TTTGCGAACA ATGACCTTGT AGAACAGAAG 
ACACAGTTCT TTGACGGTGG AGTAAATGTT GGAGATACAA CAGAACCTGC AACACCTACA 
ACACCTGTAA CAACACCGAC AACAACAGAT GATCTGGATG CAGTAAGGAT TAAAGTGGAC 
ACAGTAAATG CAAAACCGGG AGACACAGTA AGAATACCTG TAAGATTCAG CGGTATACCA 
TCCAAGGGAA TAGCAAACTG TGACTTTGTA TACAGCTATG ACCCGAATGT ACTTGAGATA 
ATAGAGATAG AACCGGGAGA CATAATAGTT GACCCGAATC CTGACAAGAG CTTTGATACT 
GCAGTATATC CTGACAGAAA GATAATAGTA TTCCTGTTTG CAGAAGACAG CGGAACAGGA 
GCGTATGCAA TAACTAAAGA CGGAGTATTT GCTACGATAG TAGCGAAAGT AAAAGAAGGA 
GCACCTAACG GACTCAGTGT AATCAAATTT GTAGAAGTAG GCGGATTTGC GAACAATGAC 
CTTGTAGAAC AGAAGACACA GTTCTTTGAC GGTGGAGTAA ATGTTGGAGA TACAACAGAA 
CCTGCAACAC CTACAACACC TGTAACAACA CCGACAACAA CAGATGATCT GGATGCAGTA 
AGGATTAAAG TGGACACAGT AAATGCAAAA CCGGGAGACA CAGTAAGAAT ACCTGTAAGA 
TTCAGCGGTA TACCATCCAA GGGAATAGCA AACTGTGACT TTGTATACAG CTATGACCCG 
AATGTACTTG AGATAATAGA GATAGAACCG GGAGAATTGA TAGTTGACCC GAATCCTACC 
AAGAGCTTTG ATACTGCAGT ATATCCTGAC AGAAAGATGA TAGTATTCCT GTTTGCGGAA 
GACAGCGGAA CAGGAGCGTA TGCAATAACT GAAGATGGAG TATTTGCTAC GATAGTAGCG 
AAAGTAAAAT CCGGAGCACC TAACGGACTC AGTGTAATCA AATTTGTAGA AGTAGGCGGA 
TTTGCGAACA ATGACCTTGT AGAACAGAAG ACACAGTTCT TTGACGGTGG AGTAAATGTT 
GGAGATACAA CAGAACCTGC AACACCTACA ACACCTGTAA CAACACCGAC AACAACAGAT 
GATCTGGATG CAGTAAGGAT TAAAGTGGAC ACAGTAAATG CAAAACCGGG AGACACAGTA 
AGAATACCTG TAAGATTCAG CGGTATACCA TCCAAGGGAA TAGCAAACTG TGACTTTGTA 
TACAGCTATG ACCCGAATGT ACTTGAGATA ATAGAGATAG AACCGGGAGA CATAATAGTT 
GACCCGAATC CTGACAAGAG CTTTGATACT GCAGTATATC CTGACAGAAA GATAATAGTA 
TTCCTGTTTG CAGAAGACAG CGGAACGGGA GCGTATGCAA TAACTAAAGA CGGAGTATTT 
GCTACGATAG TAGCGAAAGT AAAAGAAGGA GCACCTAACG GACTCAGTGT AATCAAATTT 
GTAGAAGTAG GCGGATTTGC GAACAATGAC CTTGTAGAAC AGAAGACACA GTTCTTTGAC 
GGTGGAGTAA ATGTTGGAGA TACAACAGTA CCTACAACAT CGCCGACAAC AACACCGCCA 
GAGCCGACGA TAACTCCGAA CAAGTTGACA CTTAAGATAG GCAGAGCAGA AGGAAGACCT 
GGAGACACGG TGGAAATACC GGTTAACTTG TATGGAGTAC CTCAAAAAGG AATAGCAAGC 
GGTGACTTCG TAGTAAGCTA TGACCCGAAT GTACTTGAGA TAATAGAGAT AGAACCGGGA 
GAATTGATAG TTGACCCGAA TCCTACCAAG AGCTTTGATA CTGCAGTATA TCCTGACAGA 
AAGATGATAG TATTCCTGTT TGCGGAAGAC AGCGGAACAG GAGCGTATGC AATAACTGAA 
GATGGAGTAT TTGCTACGAT AGTAGCGAAA GTAAAAGAAG GAGCACCTGA AGGATTCAGT 
GCAATAGAAA TTTCTGAGTT TGGTGCATTT GCAGATAATG ATCTGGTAGA AGTGGAAACT 
GACCTTATCA ATGGTGGAGT ACTTGTAACT AATAAACCTG TAATAGAAGG ATATAAAGTA 
TCCGGATACA TTTTGCCAGA CTTCTCCTTC GACGCTACTG TTGCACCACT TGTAAAGGCC 
GGATTCAAAG TTGAAATAGT AGGAACAGAA TTGTATGCAG TAACAGATGC AAACGGATAC 
TTTGAAATAA CCGGAGTACC TGCAAATGCA AGCGGATATA CATTGAAGAT TTCAAGAGCA 
ACTTACTTGG ACAGAGTAAT TGCAAATGTT GTAGTAACGG GAGATACTTC AGTTTCAACT 
TCACAGGCTC CAATAATGAT GTGGGTAGGA GACATAGTGA AAGACAATTC TATCAACCTG 
TTGGACGTTG CAGAAGTTAT CCGTTGCTTC AACGCTACTA AAGGAAGCGC AAACTACGTA 
GAAGAACTTG ACATTAATAG AAACGGCGCA ATTAACATGC AAGACATAAT GATTGTTCAT 
AAGCACTTTG GAGCTACATC AAGTGATTAC GACGCACAGT AA 

 

Protein sequence

MRKVISMLLV VAMLTTIFAA MIPQTVSAAT MTVEIGKVTA AVGSKVEIPI TLKGVPSKGM 
ANCDFVLGYD PNVLEVTEVK PGSIIKDPDP SKSFDSAIYP DRKMIVFLFA EDSGRGTYAI 
TQDGVFATIV ATVKSAAAAP ITLLEVGAFA DNDLVEISTT FVAGGVNLGS SVPTTQPNVP 
SDGVVVEIGK VTGSVGTTVE IPVYFRGVPS KGIANCDFVF RYDPNVLEII GIDPGDIIVD 
PNPTKSFDTA IYPDRKIIVF LFAEDSGTGA YAITKDGVFA KIRATVKSSA PGYITFDEVG 
GFADNDLVEQ KVSFIDGGVN VGNATPTKGA TPTNTATPTK SATATPTRPS VPTNTPTNTP 
ANTPVSGNLK VEFYNSNPSD TTNSINPQFK VTNTGSSAID LSKLTLRYYY TVDGQKDQTF 
WCDHAAIIGS NGSYNGITSN VKGTFVKMSS STNNADTYLE ISFTGGTLEP GAHVQIQGRF 
AKNDWSNYTQ SNDYSFKSAS QFVEWDQVTA YLNGVLVWGK EPGGSVVPST QPVTTPPATT 
KPPATTKPPA TTIPPSDDPN AIKIKVDTVN AKPGDTVNIP VRFSGIPSKG IANCDFVYSY 
DPNVLEIIEI KPGELIVDPN PDKSFDTAVY PDRKIIVFLF AEDSGTGAYA ITKDGVFATI 
VAKVKSGAPN GLSVIKFVEV GGFANNDLVE QRTQFFDGGV NVGDTTVPTT PTTPVTTPTD 
DSNAVRIKVD TVNAKPGDTV RIPVRFSGIP SKGIANCDFV YSYDPNVLEI IEIEPGDIIV 
DPNPDKSFDT AVYPDRKIIV FLFAEDSGTG AYAITKDGVF ATIVAKVKSG APNGLSVIKF 
VEVGGFANND LVEQKTQFFD GGVNVGDTTE PATPTTPVTT PTTTDDLDAV RIKVDTVNAK 
PGDTVRIPVR FSGIPSKGIA NCDFVYSYDP NVLEIIEIEP GDIIVDPNPD KSFDTAVYPD 
RKIIVFLFAE DSGTGAYAIT KDGVFATIVA KVKSGAPNGL SVIKFVEVGG FANNDLVEQK 
TQFFDGGVNV GDTTEPATPT TPVTTPTTTD DLDAVRIKVD TVNAKPGDTV RIPVRFSGIP 
SKGIANCDFV YSYDPNVLEI IEIEPGDIIV DPNPDKSFDT AVYPDRKIIV FLFAEDSGTG 
AYAITKDGVF ATIVAKVKEG APNGLSVIKF VEVGGFANND LVEQKTQFFD GGVNVGDTTE 
PATPTTPVTT PTTTDDLDAV RIKVDTVNAK PGDTVRIPVR FSGIPSKGIA NCDFVYSYDP 
NVLEIIEIEP GELIVDPNPT KSFDTAVYPD RKMIVFLFAE DSGTGAYAIT EDGVFATIVA 
KVKSGAPNGL SVIKFVEVGG FANNDLVEQK TQFFDGGVNV GDTTEPATPT TPVTTPTTTD 
DLDAVRIKVD TVNAKPGDTV RIPVRFSGIP SKGIANCDFV YSYDPNVLEI IEIEPGDIIV 
DPNPDKSFDT AVYPDRKIIV FLFAEDSGTG AYAITKDGVF ATIVAKVKEG APNGLSVIKF 
VEVGGFANND LVEQKTQFFD GGVNVGDTTV PTTSPTTTPP EPTITPNKLT LKIGRAEGRP 
GDTVEIPVNL YGVPQKGIAS GDFVVSYDPN VLEIIEIEPG ELIVDPNPTK SFDTAVYPDR 
KMIVFLFAED SGTGAYAITE DGVFATIVAK VKEGAPEGFS AIEISEFGAF ADNDLVEVET 
DLINGGVLVT NKPVIEGYKV SGYILPDFSF DATVAPLVKA GFKVEIVGTE LYAVTDANGY 
FEITGVPANA SGYTLKISRA TYLDRVIANV VVTGDTSVST SQAPIMMWVG DIVKDNSINL 
LDVAEVIRCF NATKGSANYV EELDINRNGA INMQDIMIVH KHFGATSSDY DAQ