Gene Cthe_3005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_3005 
Symbol 
ID4811153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp3528781 
End bp3530052 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content41% 
IMG OID640108426 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001039394 
Protein GI125975484 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000564074 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTTA AGAAAACTGT AATTTGTGGG GTTTTGAGCA TAGGTATCAT GGCAGGAAGT 
TCAGGATTTG CTTTTGCGCA GAATGTTAAC TACAAAGTAC AGTCCGGTGA TACGTTCTGG
AAGATAGGGC AAAAGTATAA TATTTCGACA GCCGCCCTTT TAAAGGCAAA CAATGCTAAT
GAGAATACGG TGTTGTATCC GGGACAGACA ATAGTGCTTC CGATAAAAGA CGAATCGGTG
TATATAGTTC AATCCGGAGA TACTTATTGG AATATCAGCC AGAAATACGG GATAAACTTT
AAAGAGTTAT TGGCACTGAA CAATGCCAAT GAAAATTCGA TGCTGAATGT AGGGGATAAA
GTAATTCTTC CCGCTACGGC AAATTATACC GTGCAAAAAG GAGACACTTA CTGGACAATA
AGCCAGAAAT TCAAAGTAAA CTTTACGGAA CTTTTGAAAC TGAACGGTGC CAATGAAAAA
AGTTATCTTG ACATAGGCCA GGTAATAAAA ATACCTGTAA CCAGCATGTC ACAGGTTCCG
GCAACTTCTT CAAATCAAAA CAATAATTCA ACCAATACTT CAAATAACAA TTCAGGCAAC
AACTTAAGCG GTCCGTACAT TACTTATACA AGCTATACAG TTCAAAAAGG CGATACCGCG
TGGAGTATTG CAGAAAAGTT CGGAATTTCG ATGTATGAGC TTATGGAAGC AAATAATATC
AATTCCTCGA CGGTGCTTAA TATTGGACAG AAATTAAAGA TACCGGTACA TAATGTACCT
GTAAAAAGCA CTCCTGGTGA AAAATACGGG GAACTGCTGG ACTGGTGGAC GGAAGCACAG
TATTTGATTC CAAGGGGAAG CACTTTTGAG GTGGTGGATT TCTACACCGG CAAATCCTTT
TTTGTAAAAC GTACGGGCGG TTCAAACCAT GCCGACTGTG AAACTCTTAC TGTAAAAGAC
ATTAATATAA TGAAGGAAAT ATGGGGTGGC TTCAGCTGGG TAAGAAGACC TGTGATAATC
AAATATAACG GAAGAAAAAT TGCCGCCAGC ATGACGGCAA TGCCGCATGC GGGAAATGAC
AGCGCCCCGG GTGGTGTCTG GACATCGTGG AGGAGCGGAG ATTACGGCGC GGGCACAAAC
TATGACTATA TTAAAGGCAA TGGTATAGAC GGCCACTTTG ATATACATTT TTACAACAGT
ACAAGGCATA AGGACGGAAA ACTGGATCCA AACCATCAGC AGTGCATAAA AATATCGGCA
GGGGTGCAAT AA
 
Protein sequence
MKLKKTVICG VLSIGIMAGS SGFAFAQNVN YKVQSGDTFW KIGQKYNIST AALLKANNAN 
ENTVLYPGQT IVLPIKDESV YIVQSGDTYW NISQKYGINF KELLALNNAN ENSMLNVGDK
VILPATANYT VQKGDTYWTI SQKFKVNFTE LLKLNGANEK SYLDIGQVIK IPVTSMSQVP
ATSSNQNNNS TNTSNNNSGN NLSGPYITYT SYTVQKGDTA WSIAEKFGIS MYELMEANNI
NSSTVLNIGQ KLKIPVHNVP VKSTPGEKYG ELLDWWTEAQ YLIPRGSTFE VVDFYTGKSF
FVKRTGGSNH ADCETLTVKD INIMKEIWGG FSWVRRPVII KYNGRKIAAS MTAMPHAGND
SAPGGVWTSW RSGDYGAGTN YDYIKGNGID GHFDIHFYNS TRHKDGKLDP NHQQCIKISA
GVQ