| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2838 |
|---|
| Symbol | |
|---|
| ID | 4809675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3354477 |
|---|
| End bp | 3356318 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640108258 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001039230 |
|---|
| Protein GI | 125975320 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0208595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTC TAACGTTATA TGCCGGAAAA ATCAACCAAA TGCCCGGATT GATAAATGAA
GTCAAGAAAT CTGTGGTGGA TTACAAGTCA GAATTATCCG CATTGAGAAA GAAAACTTTG
AACATCAACA GAAGTGTATG CAATTTGGAT GAAGTAATAA GTTCCATACA GGCATCTTCC
CAGACTCAGG ATAGAAAAAT TGATTCACTT GAGAAATTCT GCAGTGAAAG TGAGAAGTTT
ATATCGGAAG TAATACGTAT CGATGAAGAA GTGGCTGAGC TTATCAATAA ACGGAAAGAA
AATTTTTACA AAGAATATTA TTATTTAAAA CCGGAAAGCG AGAAAAGCGG CTGGGAAAAA
ATCAAGGACG GCTTAAAGTC GGTTGCGGAG TGGTGTAAAG AGAATTGGAA ATCCATTGCC
AAGATAGTGG CTGCCGCAGT AGTTATTACC GGGTTAGGGA TAGCGGCGGC ATTGACAGGA
GGGGTATTGG GAGTCATACT GGCAGGAGCA TTCTGGGGAG CATTGGCCGG AGGATTGATA
GGAGGAGCGG TTGGAGGAAT AGCCGCGGCG ATAAATGGAG GTTCGTTTCT GGAAGGATTT
GCGGACGGAG CATTGAGCGG AGCGATTTCC GGAGCGGTAA CAGGAGCGGC ATGTGCCGGG
CTTGGTGCTT TAGGAGCTCT AGCAGGGAAA AGCATCCAAT GTATGAGCAC AGTGGGAAAA
GCGATAAATG TTACATCAAA GGTTACGGCA GCACTTTCTT TTGGTATGGA TGGATTTGAC
ATGCTGGCAA TGGGAATATC ATTGTTTGAT CCATCCAATG CATTGGTTGA ATTTAACCGG
AAGCTGCATT CCAATGCACT TTACAATGGA TTCCAGATTG CAGTAAACGC GCTGGCTGTG
TTTACTGCCG GAGCGGCATC CACAATGAAG TGCTTCGTTG CAGGCACGCT GATATTGACT
TCGGCAGGCT TGGTTGCGAT AGAAAATATC AAGGCAGGAG ACAAGGTAAT TGCGACGAAT
CCTGAAACTT TTGAAGTAGC GGAAAAGACG GTGCTTGAGA CATATGTGAG AGAGACAACG
GAGCTTTTGC ATTTGAGAAT CGGAGGCGAA GTAATCAAAA CAACCGTCGA CCATCCATTT
TATGTTAAAG ATGTAGGTTT TGTTGAAGCG GTGAATCTGC AAGTCGGAGA CAAATTGGTT
GATTCAAGAG GCAACGTTTT GGTAGTGGAA GAGAAAAAGC TCGAAATAAC TGGTGAACCT
GTGAAAGTTT ACAACTTTAA AGTTGATGAC TTTCATACTT ATCATGTTGG GAATAAAGGG
ATATTGGTAC ATAATGCGAA TTATAATCCT AAAACTACCT TTGAAAATCT GGATCTGGAA
ACCGCCAGTA ACAAGCAAAA GGGTAATTAT GGAGAATATC GTGCGAACGA TAATTTAATT
AACAATCAAA GTCTGAAAGA AGAAAGATAT AATTTAAAAC GAAAGGGGAG AAGTGCACCG
ACATCTCCGG ATGATAAAAT TGTAAAGGGG ATAGATGGAA TATATGTAAA CGAGGATCCA
AACTCAAATA TTAAATATGT AATTAATGAG TCAAAGTTTA ATAGTGCACA ATTGGGGAAA
ACGAAAAAAG GCATAAAACA AATGTCGGAT GAGTGGCTCC TTGAGAAACA AGGTAAAAGA
ATTTTAAAAG CAGTTAATGG CGATAGAAAG CTGCAAAAAG ACATATTGCA AGCGTTAGAT
GATGGTCAAA TAGAAAAAGT TTTATCACGA GTTGGCAAAG ATGGAAAAGT GATAACATAT
AGACTGGGCA GCAATGGTGA AATAATCGGA CTTTGGCCAT AA
|
|---|
| Protein sequence | MATLTLYAGK INQMPGLINE VKKSVVDYKS ELSALRKKTL NINRSVCNLD EVISSIQASS
QTQDRKIDSL EKFCSESEKF ISEVIRIDEE VAELINKRKE NFYKEYYYLK PESEKSGWEK
IKDGLKSVAE WCKENWKSIA KIVAAAVVIT GLGIAAALTG GVLGVILAGA FWGALAGGLI
GGAVGGIAAA INGGSFLEGF ADGALSGAIS GAVTGAACAG LGALGALAGK SIQCMSTVGK
AINVTSKVTA ALSFGMDGFD MLAMGISLFD PSNALVEFNR KLHSNALYNG FQIAVNALAV
FTAGAASTMK CFVAGTLILT SAGLVAIENI KAGDKVIATN PETFEVAEKT VLETYVRETT
ELLHLRIGGE VIKTTVDHPF YVKDVGFVEA VNLQVGDKLV DSRGNVLVVE EKKLEITGEP
VKVYNFKVDD FHTYHVGNKG ILVHNANYNP KTTFENLDLE TASNKQKGNY GEYRANDNLI
NNQSLKEERY NLKRKGRSAP TSPDDKIVKG IDGIYVNEDP NSNIKYVINE SKFNSAQLGK
TKKGIKQMSD EWLLEKQGKR ILKAVNGDRK LQKDILQALD DGQIEKVLSR VGKDGKVITY
RLGSNGEIIG LWP
|
|---|
| |