Gene Cthe_2814 details

Gene Information

• Locus tag: Cthe_2814
• ID: 4809651
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 3321895
• End bp: 3323934
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640108234
• Product: periplasmic sensor signal transduction histidine kinase
• Protein accession: YP_001039206
• Protein GI: 125975296
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000129021
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGATACAA AATGGAAAAA TATTAAGTAT TCGAACATTA CAAAAGTGAT TGTGATTTTT 
CTGGCATGGC TGAGTTTTGT GTGTGCTTCT GAAAGCGTTT TTTTCGTGGT GACAAACGGA 
AACACTGTTG AATATGCCAG CTATTACGAT TATCCTGAAT TTATATCCGG TTTTTATACT 
TGTCTTGAGA GCGTTGCAGA TTATTATATT TGGGTAAAAG ATGTTGACGG CCCGGATGAT 
ATTATGGTTT TGGAAGACGA AAGCATTGCC GACAAGATGT TTGCTTATTA CAATGCCAAA 
CCGACAATTT CCGGGTTGGT GAACTTTGCT TATTATATTA AGAATAACAC TACAGGTGAA 
ACTTTTACAA ATATAAAATA TGAGGAACCG GTTGAGTTGT TAAAGAAGCA ACCTACTTAT 
ACGTATATAG ACAGGTCGCA TGTGCAAAGC ATGAAGCCGT ATAAGACAAG TCATGTAATT 
GAGGTAATAA GGAAAACGGA AATGGCATAT GAAATTCATG CAGCAATTAT AGAGCCGTTA 
AAGCCGGGGG ATAAATTTTA CGATGATTTT GTCCGTTTTA ACAGAGTGAA GCATCTCTGG 
GATTTAATGG TAGTTGTGTT TGTAGTAAGC TCCATACTGT TTATAGGCAG CCTGGTGTTC 
CTATTTAATG TTACATGGGA AAGGATAAAA TATCAGAACC GGAATTTGGC TTTTATAGAC 
AAAATGCATA TGGATATATA CACATTGGGC GTATTAATTT TAACCGCAAT AGGAATGTCT 
ATTTTTTGGA ATGTGTCATG GGATACATTG AATAAACCTT CTTCCACCTA TACATTGGGA 
AATATCTTCA TTGGTGTCAC TGTACTGAGT TTGATCTTTA TAATCTGTCT GTCCTGTCTC 
TTGTCTTTTG TTCGCCGGGC AGCGAAAGGA AAGTTGCGGA ATAGTTTTCT TTTTGTCATG 
ATTTTAAGAA AAATTGGGGA TTTCATTAAA CAACTTTTCA GCGGGAAAAT TTTTAAAGGA 
TGGATACTGT TTTTCCTTTT CATCTATGTG GCTATAGACT GCATACTATT TACAATGTTT 
GTTGACCAAT TTGTCAATTA TGGCTTCTGT AAAACAGTTG CAACTTTGGT TTTCCTGCTG 
GTATTTATAA ACGCATTGGT TTTTGTTTTT ACTGCCAAGG CATTAAGGTC TCTTGCGGCA 
ATTATCGAGG GTACTGAGCA GATATCCCGG GGTAACCTCG ATTATGAAAT GAATATTGGC 
AAAATGTCGC CTGTGTTTGT CTCTTTTGCC CAAAATATTT CCAATATCCG CGGCGGGCTG 
AAAAAAGCGG TGGAAGAAGC AATAAAGGGA GAACGCATGA AGACGGAGCT GATAACCAAC 
GTGTCCCATG ATTTAAAAAC ACCGCTCACT TCTATAATAA ATTATGTGGA CCTGCTCAAA 
AGAGAAGAGA TGGGAAGTCA AAAGGCAAAG GAATACATCG GTATTCTTGA AGAAAAGTCC 
GCAAGGCTTA AAGTACTTAT TGAGGATTTG GTGGAGGCAA GCAAGGCGTC CAGCGGGAAT 
CTGGCAGTCA ATTTTGAAAA AGTGGATCTT CATGAGCTGG TGTTGCAAGC ACAGGGAGAA 
TATCAGGATA AAATGGAAAA ATCAGGACTT GATATACGAA TCAGTGCTGA AGATAATAAT 
ATTTTTGTCC GGGCCGATGG AAGGCATATG TGGAGGATAA TAGAAAACCT TATGTCGAAT 
GTTTTGAAAT ACTCGCTTCA AGGTTCCAGG GTTTATATCG ATATAACCAG AAATCAAACT 
GACGGAGTTC TTGTTATAAA AAACATATCT GCTACTCCGT TAAATATACC GGTGGAACGA 
TTGACGGAGA GATTTGTAAG GGGCGACGAG GCAAGGACGA CGGAAGGCTC GGGACTTGGT 
CTGTCCATTG CCCAAAGCTT GACTACTTTG CAGAAAGGTA AATTTGACAT AGAAATAGAC 
GGGGATTTGT TCAAAGTAAT TGTACAAATG CCGTTATGGG AAGCTTCTTT TATTTCATAA 

 

Protein sequence

MDTKWKNIKY SNITKVIVIF LAWLSFVCAS ESVFFVVTNG NTVEYASYYD YPEFISGFYT 
CLESVADYYI WVKDVDGPDD IMVLEDESIA DKMFAYYNAK PTISGLVNFA YYIKNNTTGE 
TFTNIKYEEP VELLKKQPTY TYIDRSHVQS MKPYKTSHVI EVIRKTEMAY EIHAAIIEPL 
KPGDKFYDDF VRFNRVKHLW DLMVVVFVVS SILFIGSLVF LFNVTWERIK YQNRNLAFID 
KMHMDIYTLG VLILTAIGMS IFWNVSWDTL NKPSSTYTLG NIFIGVTVLS LIFIICLSCL 
LSFVRRAAKG KLRNSFLFVM ILRKIGDFIK QLFSGKIFKG WILFFLFIYV AIDCILFTMF 
VDQFVNYGFC KTVATLVFLL VFINALVFVF TAKALRSLAA IIEGTEQISR GNLDYEMNIG 
KMSPVFVSFA QNISNIRGGL KKAVEEAIKG ERMKTELITN VSHDLKTPLT SIINYVDLLK 
REEMGSQKAK EYIGILEEKS ARLKVLIEDL VEASKASSGN LAVNFEKVDL HELVLQAQGE 
YQDKMEKSGL DIRISAEDNN IFVRADGRHM WRIIENLMSN VLKYSLQGSR VYIDITRNQT 
DGVLVIKNIS ATPLNIPVER LTERFVRGDE ARTTEGSGLG LSIAQSLTTL QKGKFDIEID 
GDLFKVIVQM PLWEASFIS