| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2782 |
|---|
| Symbol | |
|---|
| ID | 4810099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3283059 |
|---|
| End bp | 3283817 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640108202 |
|---|
| Product | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD |
|---|
| Protein accession | YP_001039174 |
|---|
| Protein GI | 125975264 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000207909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGGCG GTGATGAAAT GGATTTAAAA GCCTGGGCTC AGCAAAACAT ACAATTTGTA
GGAAACTCAT ACACCAATAA ATCAAGCAGA AACCAGCGAA TTCCCGAAAT AATAGTCAAC
CATATATCGG AAGGTTCCAT GTCCAGCATG ATAAGCTGGT TTACATCACC AAACAACAAA
GTTTCCAGTG CCCATTTCGG GGTGAGCAAA ACAGGCAAGA TATATCAATT TGTTGCAATA
GAGGATTGCG CATGGGCAAA CGGGCTGACG TCCGGAATAG AAAACGCCAC GGCTGAGCTG
GTGCTAAAGA AAGGAGAGTC CGAAAATCCC AACTGGTATT CGGTAAGCAT TGAACACGAA
GGGGTCTGGT CAGAAACTAA AGGCGCGTTA ACTCCTGAGC AATTGGAAGC GACGAAAATG
CTTCACCTGT ATATAATCGA ATATGTGAAA GAAAAATACG GGCATGAGAT TGTGCCGTCA
CGAAAAACCA TAATCGGGCA TCATGAAATA GACAAATCCC AGAGAGCGAA TTGCCCCGGA
GAGCTGTTTC CATATAGGGA GATAATTGAC TTTTTAACTT ATTACGGCCT CCCCTTTAAA
GACATAAAAG GCCACTGGGC CGAAGACCTG ATAGTCAGTG CATATGAGCA GGGAATAATA
AAAGGTTATC ACGACGGAAC CTTCAGGCCG GACGCACCGA TGAGCAGAGC CGAAGGAGTG
GCACTTGCAA TGGCTGTACT TAACAAATTG AAAAAGTAA
|
|---|
| Protein sequence | MGGGDEMDLK AWAQQNIQFV GNSYTNKSSR NQRIPEIIVN HISEGSMSSM ISWFTSPNNK
VSSAHFGVSK TGKIYQFVAI EDCAWANGLT SGIENATAEL VLKKGESENP NWYSVSIEHE
GVWSETKGAL TPEQLEATKM LHLYIIEYVK EKYGHEIVPS RKTIIGHHEI DKSQRANCPG
ELFPYREIID FLTYYGLPFK DIKGHWAEDL IVSAYEQGII KGYHDGTFRP DAPMSRAEGV
ALAMAVLNKL KK
|
|---|
| |