Gene Cthe_2650 details

Gene Information

• Locus tag: Cthe_2650
• ID: 4808961
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 3131748
• End bp: 3133571
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 640108063
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_001039042
• Protein GI: 125975132
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAATT TGAACAACAG AATATGTCTG GCCGCCGATT GCTTGTTGGT AAACGTGGCT 
TTGTTTGCCG CACTTATGAT AAAGTTTGAT GCAAACATCC CGGAAAATTT GCTTAAAATA 
ATACCTTTTA ATTTTCTTAT TACAACTACG GTAAGCATAT TAGTATTTAA TATATTCGGC 
ATATATTCAA TGCTATGGAA CTATGCAAGT GTTGAAGAGC TTTTGAAAAT ATTTTGGGCA 
ACAATGACAT CGGTAATTGT CCAACTTCTT TTGGCTGCAT ATTTTAATGT GATGTTCCCT 
GTTTCGGTTT ACATTACATG CTGGATGATT ACATTTTATT TTATAGGCGG AACAAGATTC 
ATCGTCAGAA TAACCAGGAG TATAAAAGCA AAAAAGAGAA AAAACACCCA CAAAAAAAGA 
ATAATGATTA TCGGCGCCGG TGATACCGCT TCACTGTTGA TTAAGGAAAC AAAAAACAAT 
AAGCGCAGCA TATATGAGCC GGTAGTTGCA ATTGACGACG ACCCTAAAAA GCACAACACC 
CAAATAAACG GTGTTCCCAT CATAGGAGGC AGGGATAAAA TCATAGAAGC CGCAAAGGAT 
ATGTCTATAG AAGAAATAGT TTTAGCCATG CCGTCGGTTT CAAAAAAAGA AACGCTGGAA 
ATTATAGACT TGTGCCAGAA GACAGGCTGC AAATTAAAAG TTTTGCCAAG CGTGTACGGC 
ATTGTAAACG GAGAAGTAAG CATCAAGGAA ATAAGAGACG TCACTGTCGA GGACCTTTTG 
CCAAGAGATG AAATTTCCCT TTCCATAGAA GAGATATCCG GATATCTTAA AGGTGAAACC 
ATTCTGGTTA CCGGGGGAGG AGGTTCCATT GGCTCCGAGC TTTGCAGGCA AATAGCATCT 
TATGAGCCTA AAACCCTCCT GGTGTTTGAT ATATACGAAA ATAATGCTTA CGAGCTTCAA 
AATGAACTTG TGCAAAAATA TAAAGGCAAT CTGGATATCA AAGTGATAAT AGGATCAATA 
CGGGATAAAA AAAGACTGGA TTATGTGTTT TCCCAATACA AGCCGGGCAT AGTGTTTCAT 
GCAGCGGCTC ACAAGCATGT CCCGCTTATG GAGTTCAATC CCCAGGAAGC CGTCAAGAAC 
AATGTATTCG GCACATTAAA TGTTGCCGAA TGCGCCCATC AATACAACTG TAAAAAATTT 
GTGCTAATCT CGACCGACAA AGCGGTAAAC CCAACAAGCA TAATGGGAGC AACAAAAAGA 
ATTGCCGAGC TTATAATACA ATATATGAAC AGCATAAGCA AAACAAAATT TTGCGCCGTA 
AGATTCGGCA ACGTACTGGA CAGCAACGGA AGCGTCATCC CCCTTTTTAA AAAGCAGATT 
GAACAGGGAG GCCCCATAAC AATAACCCAT CCCGAAGTAT CCCGGTATTT TATGACCATT 
CCCGAGGCGG TAAGCCTTGT CATTCAATCC GGAGCCATGA TGGAAGGGGG AGAAATATTT 
ATACTTGACA TGGGCAAACC GGTTAAAATT ACCGACCTTG CCAGAACGTT AATTTCTTTG 
TCGGGGTTAA AGCCCGGTGT TGACATAGAT ATTGAATATA TTGGATTAAG ACCAGGCGAA 
AAGCTCCATG AAGAGCTGCT TATTTCAGAG GAAGGAGTCA GCGTAACAAA GAATGACAAA 
ATATTTATTG AAAAGAGCAG AATGATTGAC TTTGACAAGT ACATGCAGAG AATAAAAGAG 
TTTGAGCTTG ATAATTTGGA TGACAGCGAA AAAGTGATAA ATTTTATCAA AGAATTAGTT 
CCCACCTATA AGAAAAATTT GTAA 

 

Protein sequence

MKNLNNRICL AADCLLVNVA LFAALMIKFD ANIPENLLKI IPFNFLITTT VSILVFNIFG 
IYSMLWNYAS VEELLKIFWA TMTSVIVQLL LAAYFNVMFP VSVYITCWMI TFYFIGGTRF 
IVRITRSIKA KKRKNTHKKR IMIIGAGDTA SLLIKETKNN KRSIYEPVVA IDDDPKKHNT 
QINGVPIIGG RDKIIEAAKD MSIEEIVLAM PSVSKKETLE IIDLCQKTGC KLKVLPSVYG 
IVNGEVSIKE IRDVTVEDLL PRDEISLSIE EISGYLKGET ILVTGGGGSI GSELCRQIAS 
YEPKTLLVFD IYENNAYELQ NELVQKYKGN LDIKVIIGSI RDKKRLDYVF SQYKPGIVFH 
AAAHKHVPLM EFNPQEAVKN NVFGTLNVAE CAHQYNCKKF VLISTDKAVN PTSIMGATKR 
IAELIIQYMN SISKTKFCAV RFGNVLDSNG SVIPLFKKQI EQGGPITITH PEVSRYFMTI 
PEAVSLVIQS GAMMEGGEIF ILDMGKPVKI TDLARTLISL SGLKPGVDID IEYIGLRPGE 
KLHEELLISE EGVSVTKNDK IFIEKSRMID FDKYMQRIKE FELDNLDDSE KVINFIKELV 
PTYKKNL