| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2474 |
|---|
| Symbol | |
|---|
| ID | 4809854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 2945643 |
|---|
| End bp | 2946899 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640107889 |
|---|
| Product | PBSX family phage terminase large subunit |
|---|
| Protein accession | YP_001038869 |
|---|
| Protein GI | 125974959 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1783] Phage terminase large subunit |
|---|
| TIGRFAM ID | [TIGR01547] phage terminase, large subunit, PBSX family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGTGA TGACGCAAGT TAGACTTAGC GAATTAGTCG CACCGAGTTT CTACGAGATC
CACAATGACA TAAAGCATAA TAGATATACT CATTACTGGC TTAAAGGTGG CCGTGGCTCA
ACCAAATCCT CTTTCGTGAG CATTGAAATC ATCCTCGGCG TAATGAAGGA CCCTAACGCT
AATGCAGTGG CCCTGAGAAA AGTTAAGGAG ACTATCAAAG ATAGCGTATT CGAGCAGTTA
GTGTGGGCAA TTGAGAAGCT GAAAGTTACT GAATACTGGG AGATAAAGCA CAACCCTATG
GAATTGACAT ATCTACCTAC GGGACAAAAA ATATTGTTCC GTGGCGCTGA TAAGCCAAGG
AAGATTAAAT CCATCAAAGT AAGCCGGGGA TATGTAAAGT TTATCTGGTA TGAAGAAGTT
GACGAATTCC TCGGAATGGA AGAAATCCGA ATCATTAATC AGTCCTTGAT GCGTGGCGGA
GAGCAGTTTG TCGTCTTTTA TACTTACAAT CCTCCAAACA GGGTTAACGC TTGGGTGAAT
GAAGAAATAC TGATTGATAG ACCGGACAGA AAGGTCCATC ATAGCACGTA TTTGACTGTT
CCTCGAGATT GGCTTGGGGA ACAGTTTTTT ATTGAGGCAG AACATCTTAA AAAAGTTAAC
GAGAAAGCGT ATAGGCACGA GTATTTAGGT GAAGTCACCG GCACAGGCGG CGAGGTATTT
ACAAACGTGA AAGCAAGGAA GATAAATGAC GAGGAAATAA AAGCATTTGA CAGGATAAAA
AGAGGACTGG ACTTTGGCTA TGCTGTTGAC CCGGCAGCTT ACATTGTGTG CCACTTTGAT
AAAACAAGGC GGCGGCTTTA TATATTTCAC GAGATATTCC AGGTCGGCTT GAGCAATAGG
AAATTGGCAG AGTTAATTAA GAAAGAAAAC AAAAGCAATA AGTTAGTGGT TGCGGACAGC
GCGGAGCCAA AGTCAATAGC CGAATTGCGT GGTTATGGAA TCAACATAAG GGGAGCGAAA
AAAGGACCGG ACAGCGTTGA ATATGGAATA AAGTTTTTGC AAGACCTTGA AGAGATAATA
ATTGACCCTG AGCGATGTCC AAATACATTG CGAGAGTTCG TAAATTATGA ACTTGAGAAA
GACAAAGACG GCAATTTTAA AGCTGAATTC CCGGATAAAA ACAACCACAC GATCGATGCT
GTTAGGTATG CGCTTGAGGA TGATATGAGG ACGGGCGGCC TATCAATTTT AAAGTGA
|
|---|
| Protein sequence | MIVMTQVRLS ELVAPSFYEI HNDIKHNRYT HYWLKGGRGS TKSSFVSIEI ILGVMKDPNA
NAVALRKVKE TIKDSVFEQL VWAIEKLKVT EYWEIKHNPM ELTYLPTGQK ILFRGADKPR
KIKSIKVSRG YVKFIWYEEV DEFLGMEEIR IINQSLMRGG EQFVVFYTYN PPNRVNAWVN
EEILIDRPDR KVHHSTYLTV PRDWLGEQFF IEAEHLKKVN EKAYRHEYLG EVTGTGGEVF
TNVKARKIND EEIKAFDRIK RGLDFGYAVD PAAYIVCHFD KTRRRLYIFH EIFQVGLSNR
KLAELIKKEN KSNKLVVADS AEPKSIAELR GYGINIRGAK KGPDSVEYGI KFLQDLEEII
IDPERCPNTL REFVNYELEK DKDGNFKAEF PDKNNHTIDA VRYALEDDMR TGGLSILK
|
|---|
| |