| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2196 |
|---|
| Symbol | |
|---|
| ID | 4811061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2621203 |
|---|
| End bp | 2622804 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640107602 |
|---|
| Product | carbohydrate-binding family 6 protein |
|---|
| Protein accession | YP_001038591 |
|---|
| Protein GI | 125974681 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAGG TTTTATTGTC TCTGTTGATA AGTACTTTGA TTATAACTTT TTATATACCG
TCATGTTTTG CGGACAATCC GATAGTACAA ACAATCTACA CTGCTGACCC TGCTCCGATG
GTATATAACG GGGTATGCTA CGTGTATACC ACCCATGATG AGGATGTTCT TATTGATAAC
TTCTTTACCA TGAATGACTG GAGATGCTAC TCCACGACAG ACATGGCAAA CTGGACCGAT
CATGGAACAG TGTTGTCCTA CACTGACTTC AGTTGGTCAA GCGGTAAAGC ATGGGCGGGT
CAGTGCGTGG AAAGAAACGG CAAATTCTAT TTTTACGTTC CTCTGGCAAA GAAAGGCGGA
GGAGAGGCGA TTGGAGTTGC AGTATCGGAC AGTCCGACGG GTCCGTTTAA AGATGCCTTG
GGGAAACCTT TGATAGACCG CGGGGGCTGG GGTGAGATAG ACCCCACCGT GTTTATCGAT
GATGACGGGC AGGCGTACCT TTACTGGGGA AACCCTGATC TTTACTATGT GAAACTGAAT
CCTGACATGA TTTCCTATTC GGGCGGCATT GTCAAAGTAC CTCTTACCAC AGCAGGATTT
GGACAGCGAA GCAAAAACGA CAGACCGACT TCCTATGAAG AAGGTCCGTG GTTTTACAAG
CGTAACAATT TATATTATAT GGTGTTTGCA GCAGGTCCGA TACCCGAACA TATTGCATAT
TCAACGAGTA CGAGTCCCAC CGGACCGTGG ACGTATCGCG GCGTAATAAT GCCGACCCAG
GGAGGCAGTT TTACCAATCA TCCCGGAATA ATTGATTATA AAGGGAATTC CTACTTCTTC
TACCATAATG CCGCTTTACC GGGGGGAAGC GGCTACCACC GTTCTGTTTG CGTGGAACAG
TTTCAATATA ATCCCGACGG AACAATTCCA AGGATTAATA TGACCAAAGA AGGGCCCCCG
CAGATAGGCA CTTTGAATCC ATATGTAAGA ACCGAAGCTG AAACCATTTG CTGGAGCTCA
GGTATCGAGA CGGAAAAATG CAGTGAAGGC GGAATGAATG TAGGCTTTAT TGAAAACGGG
GATTACATAA AGGTTAAAGG TGTGAATTTC GGAACCGGTG CGGCGTCCTT TGAGGCAAGA
GTGGCATCGG CAACCAACGG CGGAAACATA GAAATTCGGC TTGACAGCCC AACGGGAAAA
TTAGTGGGAA CGTGTACCGT TACAGGAACC GGAGGATGGC AGACCTGGAC TACCAAATCT
TGTCCGGTTT CCGGTGCCGA GGGAGTACAC GACTTATACT TTGTTTTCAA GGGTGGCAGC
GGTTATTTGT TCAATATAGA CTGGTGGAAG TTCACTCCGG CAAATCCGGA TCCAACGCCA
ACACCGATGC CGGATAAACG TTTGGGTGAT TTGAATAATG ACGGAAAAGT AAACTCGACA
GACTTTCAGC TGTTAAAAAT GCATGTACTC CGTCAAGAAC TTCCGGCAGG AACGGACCTT
TCAAATGCGG ATGTAAACAG AGACGGAAAA GTGGATTCCA GCGACTGTAC TTTGTTAAAA
AGATATATAC TGCGTGTTAT ATCGGATTTT CCTCAAAATT AA
|
|---|
| Protein sequence | MRKVLLSLLI STLIITFYIP SCFADNPIVQ TIYTADPAPM VYNGVCYVYT THDEDVLIDN
FFTMNDWRCY STTDMANWTD HGTVLSYTDF SWSSGKAWAG QCVERNGKFY FYVPLAKKGG
GEAIGVAVSD SPTGPFKDAL GKPLIDRGGW GEIDPTVFID DDGQAYLYWG NPDLYYVKLN
PDMISYSGGI VKVPLTTAGF GQRSKNDRPT SYEEGPWFYK RNNLYYMVFA AGPIPEHIAY
STSTSPTGPW TYRGVIMPTQ GGSFTNHPGI IDYKGNSYFF YHNAALPGGS GYHRSVCVEQ
FQYNPDGTIP RINMTKEGPP QIGTLNPYVR TEAETICWSS GIETEKCSEG GMNVGFIENG
DYIKVKGVNF GTGAASFEAR VASATNGGNI EIRLDSPTGK LVGTCTVTGT GGWQTWTTKS
CPVSGAEGVH DLYFVFKGGS GYLFNIDWWK FTPANPDPTP TPMPDKRLGD LNNDGKVNST
DFQLLKMHVL RQELPAGTDL SNADVNRDGK VDSSDCTLLK RYILRVISDF PQN
|
|---|
| |