| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1928 |
|---|
| Symbol | |
|---|
| ID | 4810786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2300254 |
|---|
| End bp | 2301255 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640107344 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001038339 |
|---|
| Protein GI | 125974429 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01443] intein C-terminal splicing region
[TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000122505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAGGAG CGGCATGTGC CGGGCTTGGT GCTTTGGGAG CTCTAGCAGG GAAAAGCATC
CAATGTATGA GCACAGTGGG AAAAGCGATA AATGTTACAT CAAAGGTTAT GGCAGCACTT
TCTTTTGGTA TGGATGGATT TGACATGCTG GCAATGGGAG TATCATTGTT TGATCCATCC
AACGCATTGG TTGAATTTAA TCGGAAGCTG CATTCCAGTG CACTTTACAA CGGATTCCAG
ATTGCTGTAA ACGCGCTGGC TGTTTTCAGT GCCGGGGCGG CATCTACAAT GAAGTGCTTT
GTTGCAGGCA CGCTGATATT GACTGTGGCA GGCTTGGTTG CAATAGAGAA TATCAAGGCA
GGAGACAAGG TAATTGCGAC GAATCTGGAG ACTTTTGAAG TAGCCGAGAA GACAGTGCTT
GAGACATATG TGAGAGAGAC AACGGAGCTT TTGCATTTGA CAATCAATGG AGAGGTAATC
AAGACAACCT TTGAGCATCC GTTTTATGTT AAAGATGTGG GTTTTGTTGA AGCTAAAGAA
TTGCAAGTAG GAGATAAGCT GCTAGATTCA AAAGGCAATG TTTTGGTGGT GGAAGAGAAA
AAGCTTGAAA TTACAGATGA ACCTGCCAAG GTTTATAACT TCAAGGTTGA TGATTTTCAT
ACTTATCATG TCGGCAATAA TGGAATATTG GTACATAATG CAAATTATAG TAAGGGAATG
AGTAGTAATA TCCCCGACTA TATAAAAGAT AATCGTGTAC CTTTAGATAA GGAGACAGTA
TTGAACAGTA AGGAGTACCA AAAAACTAAT ATTAAAGTTA AAGGTGCTCA AGTTTACAAA
AAAGGGGATA AATATTATTA CCGTGATACT TTCCATACAG GAGAAGCGGC TCATTTAGAG
GTGTTTGATA AGAGAGGAAA CCATATTGGT GAAGCTAATC CACTAACTGG AGAATTGATA
CCGGGAACAG CAGATCCGAT GAAGAAAATT AAAATAAAGT AG
|
|---|
| Protein sequence | MTGAACAGLG ALGALAGKSI QCMSTVGKAI NVTSKVMAAL SFGMDGFDML AMGVSLFDPS
NALVEFNRKL HSSALYNGFQ IAVNALAVFS AGAASTMKCF VAGTLILTVA GLVAIENIKA
GDKVIATNLE TFEVAEKTVL ETYVRETTEL LHLTINGEVI KTTFEHPFYV KDVGFVEAKE
LQVGDKLLDS KGNVLVVEEK KLEITDEPAK VYNFKVDDFH TYHVGNNGIL VHNANYSKGM
SSNIPDYIKD NRVPLDKETV LNSKEYQKTN IKVKGAQVYK KGDKYYYRDT FHTGEAAHLE
VFDKRGNHIG EANPLTGELI PGTADPMKKI KIK
|
|---|
| |