Gene Cthe_1919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1919 
Symbol 
ID4810777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp2289574 
End bp2290272 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content39% 
IMG OID640107336 
ProductMgtC/SapB transporter 
Protein accessionYP_001038331 
Protein GI125974421 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.000262716 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAATA TGATAAGGAC TTTTTTTGAA AACGGGGGCT TTTATTTAAT TGTTATTATG 
AGGCTCCTTC TTGCATGCAT CCTGGGTGGG TTGATAGGTT ATGAAAGAGA GAGCACGAAC 
AGGCCCGCCG GTTTTAGAAC TCATATTTTG GTATGTGTTG GCTCAGCTCT TGTCATGATT 
ACTTCCCAGT ATATTTTTGA GAGTTATAAA GGAATTACTA ACCTTGATCC TGCCCGTCTC 
GGAGCCCAGG TAATCAGCGG TATCGGCTTT TTGGGAGCGG GAACCATAAT CCGTGAGGGT 
GCAAATGTCA GGGGCCTTAC TACCGCGGCA AGCCTGTGGG CAGTTTCCTG TGTCGGGATT 
GCAGCAGGTA TCGGTTTTTA TGAAGGAGCG GTTATATCCA CAATAGTTAT TTATATTACA 
CTTATTTTGC TTAAAAGAAC GGAAAAACAT ATTGCCAGAA AAAACAATCT GAGCATATTC 
TATATACAGA CTGAAGATTT GCCTGGACAA ATTGGTACAA TAGGCTGTAT ATTTGGTAAG 
CATAATATAA CAATAAGAAA TATAGAGTTT ATCAATGAGA AAAAAGATGA AGAAGTGTTG 
ATAAAATTTG CAGTAAAGAT GCCCTCTGAT ATGTCTAAAG AAAAAATAAT GGATGAGTTG 
CAGAGAGTAA ACGGAGTGAA AAAGGTTACA GGCCAATAA
 
Protein sequence
MINMIRTFFE NGGFYLIVIM RLLLACILGG LIGYERESTN RPAGFRTHIL VCVGSALVMI 
TSQYIFESYK GITNLDPARL GAQVISGIGF LGAGTIIREG ANVRGLTTAA SLWAVSCVGI 
AAGIGFYEGA VISTIVIYIT LILLKRTEKH IARKNNLSIF YIQTEDLPGQ IGTIGCIFGK 
HNITIRNIEF INEKKDEEVL IKFAVKMPSD MSKEKIMDEL QRVNGVKKVT GQ