Gene Cthe_1787 details

Gene Information

• Locus tag: Cthe_1787
• ID: 4810032
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 2107797
• End bp: 2109731
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640107201
• Product: glycoside hydrolase 15-related
• Protein accession: YP_001038201
• Protein GI: 125974291
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3387] Glucoamylase and related glycosyl hydrolases
• TIGRFAM ID: [TIGR01577] oligosaccharide amylase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.26438
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAACA CATACTTTAA TGATGCGATT ATCGGAAATT CCGGCATGCT TGTGTGTCTG 
ACACGAAATG GTGAGCTTAC AAGACTTTTT TGGCCCAACA TTGACTATCC GCAGCATTTT 
GAAAAAATGG CGACGGGAAT CTTTTATACG GGCCAGAAAA ACAGCACTTC CTGGTTTTAT 
GAAGACAACT GGCACCACAC TCAGTATTAT GTGGAAGACA CCAATATTCT AAAAACAATA 
TGTGAGGATG GCGGCAGAGG ACTTCGAGTG GAGCAGACGG ACTTTGTTCT GAAAGACAGG 
GATGTAATGG TAAGAAGATA TGTAATAGAA AATATTGGGC CAAATGAAGT GGATCTTGGT 
TTTGTTCAAT ATTCTTCAAC AGTCTCTACA ACTCCTGAAC TAAGAAGCAC TCTGTTTGAC 
TTTAATGTGG ATGCTCTTAT TCATTACAGG CATAATTACT ATATTTCAAT TTCATCAGAC 
AGTGAAGTTG TACAGTTTCA ATTGGGGAAT AACGCTTTTG ACTGTGCAAG GTACACGGAG 
CTTTACGGAT ATGACTCCAT AGGAATGATG AAGGATGGGG CCATGTCCTT TAATATTGGG 
AAGATTGAAC CAGGAGGAAA GAAAACTTTT AATCTCTTCA TCTGTGCCTC CCATACCTTA 
AAAGGCGTTA AAGAGTTGGT AAGATGGTGC AGAAAAATGA ATGTCGATGA GGAGTATGAG 
AAAACTCGCA AGTATTGGCT GGACTTTCTG AAAAATGCAA GATTGATTGT AACGGGAGAC 
AAGAATATTG ACAACTTGTA TAAAAGGTCT ATTTTGGTGT TTAAGCTTAT GTCCGATGAA 
CGGACGGGAG GATTGCTGGC TTCAGCGGAA ATAGATGAAG GATTTACAAG GTGCGGGCGC 
TATGCATACT GCTGGGGAAG GGATGCGGCA TTTATTACCG GCGCACTGGA TACCGCAGGG 
CTTACCGAAG CAGTGGACAA ATTCTACCAG TGGGCTGTTA TGACCCAGGA TGATGACGGC 
TCGTGGCAGC AAAGATATCA CATGGATGGA AACCTTGCCC CATCATGGGG ACTTCAGATA 
GACGAGACAG GTACCCTTAT ATGGGGTATG TTAAAACACT ATGAGGTCAC AAAGAATATA 
GATTTTCTTA AAAGCATGTG GGAGAGCATA AAAAAAGGTG TTGAATTTTT AACCCGGTTT 
ATAGACAGCG ACACAGGATT GCCTGCCCCA AGCTATGATT TGTGGGAGGA AAGGGTTGGA 
GAACACACTT ATTCCAGTGC CGCAGTATAT GCGGGCATTA AAGCCGGTGC TGAAGCGGCA 
CGAATTCTTG GTGCTTCCGA AGAATTAATT GAAAAATGGG AAAAGGCGGC TTCTGATATG 
AAAGCCTCCA TAGAGAAAAA TTTTTGGAGG GATGAGGCCG GAAGATTCAT CAGAAGTGTG 
CGCACTAAGC TCAATCCATG GGGAAGTGAA CATTCGCCCT ACACGACGGT AATAAAAGTC 
AATGAAAAAG GGTATTTCAG GGATGTTACT TTGGAAGACT GGACCATTGA TGTAAGCCTT 
CTTGGAGTTT CCATTCCTTT CGGTGTTTTT GATGTGCATG ACGAACGTGT GAAAAAAACA 
GTAGAAGCCA TTGAAAGGGC TTTGACTTCC CACCCGGTGG GCGGAATAAA AAGATATGAA 
AATGACAACT ATATTGGAGG AAACCCGTGG GTATTGGCAA CTTTGTGGGT GGCCCTGTAT 
TATATTGAGA TAAAAGAATA TGAAAAAGCA AAGGATTATT TGAGATGGGC GACCAAATCC 
TGTACCGCTT TGGGGCTTTT GCCGGAGCAG GTGAGCAAGG ACAACGGCGA GCCTTGCTGG 
GTAATACCTC TTACATGGTC CCACGCCATG TATGTATTGG TGCTTGCAGG ACTTAAAGAG 
GCGGGGGTTT TATAA 

 

Protein sequence

MANTYFNDAI IGNSGMLVCL TRNGELTRLF WPNIDYPQHF EKMATGIFYT GQKNSTSWFY 
EDNWHHTQYY VEDTNILKTI CEDGGRGLRV EQTDFVLKDR DVMVRRYVIE NIGPNEVDLG 
FVQYSSTVST TPELRSTLFD FNVDALIHYR HNYYISISSD SEVVQFQLGN NAFDCARYTE 
LYGYDSIGMM KDGAMSFNIG KIEPGGKKTF NLFICASHTL KGVKELVRWC RKMNVDEEYE 
KTRKYWLDFL KNARLIVTGD KNIDNLYKRS ILVFKLMSDE RTGGLLASAE IDEGFTRCGR 
YAYCWGRDAA FITGALDTAG LTEAVDKFYQ WAVMTQDDDG SWQQRYHMDG NLAPSWGLQI 
DETGTLIWGM LKHYEVTKNI DFLKSMWESI KKGVEFLTRF IDSDTGLPAP SYDLWEERVG 
EHTYSSAAVY AGIKAGAEAA RILGASEELI EKWEKAASDM KASIEKNFWR DEAGRFIRSV 
RTKLNPWGSE HSPYTTVIKV NEKGYFRDVT LEDWTIDVSL LGVSIPFGVF DVHDERVKKT 
VEAIERALTS HPVGGIKRYE NDNYIGGNPW VLATLWVALY YIEIKEYEKA KDYLRWATKS 
CTALGLLPEQ VSKDNGEPCW VIPLTWSHAM YVLVLAGLKE AGVL