| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1762 |
|---|
| Symbol | |
|---|
| ID | 4810006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2083795 |
|---|
| End bp | 2085060 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640107175 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001038176 |
|---|
| Protein GI | 125974266 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0464275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG TTGTGAAAAT TATAATAGTA ATAGCAGTTC TTGGAGGACT TGTAGGGTTA
ACCTATCTTT TGAGCGGCAA TATGGAGCAG GTGTTTAGCA GCAGTACCGT TTACAGTGTA
AAAACCGTCG AAATCGGGAA GGGCAGCATA TCTTCGTCGG TTTCGGCTTC GGGAAAAATT
GAGGAAGTTG ATTCCTATGA TGTCTATATA GACAATCCTG TAAAGGTTAA GAAGCTTTTG
GTTGAAAAAT ACCAAAAGGT GTCAAAGGGA CAACAGCTTG TGGAGTTCGA TATTGAGGAT
ATGGAAACGG AGCTTGAAAA GCTTAAAATA AACAAAAAAG TTCAGGAGCT TTCTCAGAAC
TCTCCGACGG TTGATGCCGA GATAAAAAGG GCCGAGTCGG CGGTAAAAAG CGCGGAGCAG
GCTTTAAGCG ACGCTGAAAA GAAATACGAG GACAGCAAAA AACTTTTTGA AGCACAGGCA
ATATCAAAAA GTGAACTGGA TATGGCTGAA AATGCCGTAA GAGATGCAAG AACCGCGCTG
GAGAATGCAA CAGTTGCCTA TAATGCCGCC GTAGAAAGCA AAGACGTGGA CCAAAAGGTA
AAAAAAGAGA ACCTCAACGC CCTTATACTT AGTATAAGCG ACCTTGAGAA GAAAATTCAA
AAGACAAAGG AATCAATGTT TTGCCCGTTT GACGGGATTG TTACCGAGAT AAATATTCAG
GAGGGAGCTT ATACAAGCAA TATGCAGCCT GCCTTCAGGA TTGTCAATCT TGACAAGCTA
AAGGTAAAGG CCATGGTAAA CGAATACAAT ATAAAAGATG TAAAAGTGGG ACAGAAAGTC
AGAATCACCG GAGATGCCAT CAGGGAAGAT GTCGAGGTTT TCGGAGTGGT GGAAAGTATT
TCACCGGTTG CAAAAACAAA TATGACAGCC TCGGGCGAAG AAGTTGTAAT TGAAGTGGAC
ATATCGATAG ACAATACTGC TTTGAACCTG AAACCGGGAC TTAGTGTCGA TTGTGAAATA
TTAACCGATG AGAAAAAAGA TGTAGTTGTG GTGCCCATGG GAGTCTTAAA GACTGACAAG
GACGGAAACG AATATGTGCT GCTGGTGGAC AAAGAGAAAG GTGTCCTTAT GCAGCGAAAT
GTAAAGCTTG GTATTATCTC CGACATGACT GCCGAGGTGT TGGAAGGGCT TGCGGAAGGA
GATATTGTTG TCGATGATCC ACAGTCGTTC CACAAGGATG GATCTAAAGT CAGGATAATT
GAATAG
|
|---|
| Protein sequence | MKKVVKIIIV IAVLGGLVGL TYLLSGNMEQ VFSSSTVYSV KTVEIGKGSI SSSVSASGKI
EEVDSYDVYI DNPVKVKKLL VEKYQKVSKG QQLVEFDIED METELEKLKI NKKVQELSQN
SPTVDAEIKR AESAVKSAEQ ALSDAEKKYE DSKKLFEAQA ISKSELDMAE NAVRDARTAL
ENATVAYNAA VESKDVDQKV KKENLNALIL SISDLEKKIQ KTKESMFCPF DGIVTEINIQ
EGAYTSNMQP AFRIVNLDKL KVKAMVNEYN IKDVKVGQKV RITGDAIRED VEVFGVVESI
SPVAKTNMTA SGEEVVIEVD ISIDNTALNL KPGLSVDCEI LTDEKKDVVV VPMGVLKTDK
DGNEYVLLVD KEKGVLMQRN VKLGIISDMT AEVLEGLAEG DIVVDDPQSF HKDGSKVRII
E
|
|---|
| |