| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1517 |
|---|
| Symbol | |
|---|
| ID | 4810555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1841721 |
|---|
| End bp | 1842830 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106937 |
|---|
| Product | type I phosphodiesterase/nucleotide pyrophosphatase |
|---|
| Protein accession | YP_001037938 |
|---|
| Protein GI | 125974028 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1524] Uncharacterized proteins of the AP superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAA ACATTGTTTA TCCGGATTAC AGCAATTCAA TAGCGAATCT TGCAAATTCA
ATTCTGAAAA AATGGGGACT TCCGACTAAT GGTAAAACTC TAGAGCTTCT CGACCGGTAT
CTTGCGAAAG ATTATAAGAA TGTGGTGGTT ATTCTTCTTG ATGGAATGGG CAGATGCATT
ATTGAGCGCA ATCTCGAAAA AGACGGCTTT TTCAATACCC ACTTGGCGGG AACATACAGC
TCGACATTTC CATCAACTAC AGTAGCGGCT ACAACATCAA TCGATAGCGG TCTTACTCCC
TGTGAACATG GATGGCTTGG ATGGGACTGT TACTTTCCGC AGATAGACCG AAATGTAACG
GTATTTCATA ATACGGACAC CGAGACCGGA GAGAAGGTGG CAGAGGAGAG TGTTGCATGG
AAGTACTGCT GGTATTCAAG CGTGATTAAC AGGATTGATT CAGCGGGAGG AAAAGCATAT
TATGCTATAC CGTTTGTTTC GCCTTATCCG GCAACATTTG AGGAAAGATG CGAACTGATA
AAAAAATATT GTGATGAACC CGGGCAAAAG TATATCTACT GTTATTGTGA CGAACCTGAC
AAAACTATGC ATCTGACCGG TTGCTACAGT GAAGAATCAA GGAAAGTGAT TTCATGGCTT
GAAAGAAAAA TAGAGAGTCT TACTACCGAA CTAAGGGACA CTCTTGTGAT AATAACTGCC
GACCATGGCC ATGTGAACAC AAAACGTGTG TGTATTAAGG ATTATCCAAA TATTATGAAT
TGTCTGAAAA GAATTCCCAC TATTGAACCC AGAGCTTTGA ATTTGTTTGT GAAGGAAGAC
AGAAGAGACG AATTTGAGAA AGAATTTACT TGTGAATTTG GCGGCAAGTT TCTCCTTTTG
CCAAAAGAAA AAGTACTCGA AATGAAATTA TTCGGATACG GAACAGAGCA TAAAGACTTT
CGCAATATGC TGGGAGATTA TCTTGCTGTT GCAACAGATG ATTTGTCTAT TTTTAACACA
AAAGAAAAGA AAGAGAAATT CGTTAGCTCT CATGGGGGAC TTACAGAAGA CGAGATGATT
ATTCCGTTGA TTATTGTGGA AAAGAAATAG
|
|---|
| Protein sequence | MNTNIVYPDY SNSIANLANS ILKKWGLPTN GKTLELLDRY LAKDYKNVVV ILLDGMGRCI
IERNLEKDGF FNTHLAGTYS STFPSTTVAA TTSIDSGLTP CEHGWLGWDC YFPQIDRNVT
VFHNTDTETG EKVAEESVAW KYCWYSSVIN RIDSAGGKAY YAIPFVSPYP ATFEERCELI
KKYCDEPGQK YIYCYCDEPD KTMHLTGCYS EESRKVISWL ERKIESLTTE LRDTLVIITA
DHGHVNTKRV CIKDYPNIMN CLKRIPTIEP RALNLFVKED RRDEFEKEFT CEFGGKFLLL
PKEKVLEMKL FGYGTEHKDF RNMLGDYLAV ATDDLSIFNT KEKKEKFVSS HGGLTEDEMI
IPLIIVEKK
|
|---|
| |