| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1056 |
|---|
| Symbol | |
|---|
| ID | 4811354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1261445 |
|---|
| End bp | 1264117 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640106478 |
|---|
| Product | transglutaminase-like protein |
|---|
| Protein accession | YP_001037481 |
|---|
| Protein GI | 125973571 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGCA AAAAAATTCT CGATTATCTG GCCGGTTTTG TTCTTGCGGC TTTAATGAGT
TTCAGCCTGG TTTATCCTCT TACCACCACG CTGGGTTTCC CTTATTCGTC TTTCCGTATT
TTAGGGCTTG TAATCTTTAT TCTGTTTATA TATTCGGTGC TGTTTGCAAA CAGAAACGTC
TCAAGAATTT CTGTGCCTCT TGCAATAATT TCCATGGCAG CCGGCATTGT CTTTTTAGCG
GTTAAAAAAG ATTTGGCATA TATCATCCAA CCTTTTCAGT GGTTTACTAA ATATATTTAT
GACGAAGCCA TACTTCCGGA CAATTACTAT CCTCTTTTTA TTACCGTGAT TTTAGCGCTG
TCGCTTACAC TGCTTGTATT TATATTTACC ATGAAAAAAT TCAATTTTAT AATCATTCTC
TCAAGCGGAA CAGCCATCTT TGTATCCCAA TGGATATTGA ATTTTTTCGT GCCGTCCGCC
TATATATCTT TTTACACCTT TGTCATTTCA ATACTGGCAT ACTATCTTGT GCATATATAC
AGAAAAAAAA GCCTGGAAAA TTCAAATAAT GATTTTGCCT CCCCTTCGAA GTTCATACTG
GGAATCGCTC CCATATGCGT CGTAATTGTC TTTCTGGCAA ATTCAATACC TGTAAGGTCA
AAACCTATTG AGTGGAAATG GCTGGATAAC AAAATCAACA GCTTTTACAA TCAGCTCGGA
TTTGGCACTC TCGGCAAAGG TTCCGCAGGT TTTGATTCCG ATTACTTTTC TTTTTATTCC
ACTGCCGGAT TTGGAAATGA CAGCAATTTA GGCGGAAACA TAACACCCAA CGATATAAAG
ATAATGGAAG TTACCACCGA TCGCAGCATC TACCTGAGGG GACGGGCATG TAATTTATAT
ACGGGAAATA GTTGGTTGAA TTCACAACCG GACAACATCC CTTTGGACGG CACAAATAAA
ATGAGCTTTG ATATTTTAGA AATGAAAACA GGCTTACCCC TCCTTGTCAA CAAACTGAAT
CCGGAAAACA ACACATACAA GCTTTCAGAC ACCGATGGAA TCATCCCCAA CATTATTTCA
AAACATAATG TCAAGGTAAA ATATGAAAAT GTGAGAACCA AATCCCTTTT TGTACCGCTT
AAATCAGAAA ACTTCATTTT TCCGTCCAAA GTAGCTGATG CAGTATTAAT AAACCAGGAT
GGAATACTTA CCTCTAATAA ATTCCTAAAG AAAGATTTCA CCTATTCCTT TGAAAGTTAT
AGCCTAAATA CTGTCAGCGA AGATTTCAAA AACCTTCTGA GACAAAGTAT GCGCGGCCTG
TACAGCGTTG AACTGAACAG ACTTACAGAT GAAATCTATG AACATTTGTA CAGCGAATAT
TTAAAGGATC TGTTGGATGA AGCAGAAAGG ATATACAATT CCGATCTTTT TATATTAAAT
AGATATTCAG TTCAATTTCC AATAAAAAAT ATAATAAGAA ATACTCCGGA TAATATAACT
TTAAGCGACC TGCTATATGA ATACCTCGTT AATGTTTTCA TAGATGAATT TAATCTCGAC
AGAGTTTTCG AGCGCGAAGA TTTGGAAAGA TATTTCCAAA TGATCATTAA CGAGCTTAAC
AATTCGGAGG ACATAAAGAA GCTTGCGCAA CTTAGGTCTT TAAGCTCCAA TTCAGTCTAT
ATTTACAACA CTTATCTAAA CATACCCTCC GAGCTTCCTC AGAGGGTAAA AGACCTTGCC
GTTTCAATAA CAGCCAATGA AACCAATAAT TTCGACCGGG CAAAAGCAAT TGAAAAATAT
CTTTCTGCAA ATTACGGCTA CACACTGACT CCGGGAGATA CCCCGCCTGA CAGGGATTTT
GTGGACTACT TCCTTTTTGA ACAAAAGGAA GGCTATTGTG TGTATTTTGC CTCTGCCATG
GTAATCCTTG CACGCAGTAT AGGGCTTCCG GCCCGTTATG TTGAAGGGTT TGTTCTTCCC
GTGAGATCAA AAGACGGTGT CTATGAGGTT ACAAACAAAC AGGCCCACGC CTGGCCGGAG
ATCTACTTTG AGGGATTCGG CTGGGTCTCT TTCGAACCGA CTCCCGTCTA TCAGCAAAAC
TCGTTTTACA GTTCCGGCAG CTTTAGGCCC AACATGAGCG GAATGCTTCC CCAAACCAAC
GGCACAGGGC TTCAAAACCA AAACAATGAT GAAGGCAACA AGCCCGACAT GGCTCCCCAA
CCTGTCCAAA ACCAAAATCC GTTTATCAAT ATCCTTTTGA TTACGGCCGG GATACTTGCA
GGTTTGGTTT CTTTTGTGTT GATTATCGTG GGTATCAATA AAATCAGAAA AAAACATTGG
CTTAAATCCA TTTTAAACAT GTCGCCCAAA GAAGCGGTAA TAAAGTTATA CGAAACATAC
CTTAATCACC TTTTATATCA ATATATGCCT GTGCGTCCCG CGGAAACCCC TCTTGAATAT
GCAAAGAGGC TCGACGATTA TGGATATTTT GCTCCCAGGA AGTTTACTGA TGTTGCATCC
ATATTCGTAA AAGCGAGATA CAGTCAAAAC GAGGTGACCG AGGCAGACAG GGCAAGTGCT
TTGGAATTTT ACAAACCCAT AGTTTTAAAA ACACGAAGCT CCATGGGACG CCTAAAGTAT
TTCTTCCTGG CGCATATACT TGGAAAGATA TAA
|
|---|
| Protein sequence | MDGKKILDYL AGFVLAALMS FSLVYPLTTT LGFPYSSFRI LGLVIFILFI YSVLFANRNV
SRISVPLAII SMAAGIVFLA VKKDLAYIIQ PFQWFTKYIY DEAILPDNYY PLFITVILAL
SLTLLVFIFT MKKFNFIIIL SSGTAIFVSQ WILNFFVPSA YISFYTFVIS ILAYYLVHIY
RKKSLENSNN DFASPSKFIL GIAPICVVIV FLANSIPVRS KPIEWKWLDN KINSFYNQLG
FGTLGKGSAG FDSDYFSFYS TAGFGNDSNL GGNITPNDIK IMEVTTDRSI YLRGRACNLY
TGNSWLNSQP DNIPLDGTNK MSFDILEMKT GLPLLVNKLN PENNTYKLSD TDGIIPNIIS
KHNVKVKYEN VRTKSLFVPL KSENFIFPSK VADAVLINQD GILTSNKFLK KDFTYSFESY
SLNTVSEDFK NLLRQSMRGL YSVELNRLTD EIYEHLYSEY LKDLLDEAER IYNSDLFILN
RYSVQFPIKN IIRNTPDNIT LSDLLYEYLV NVFIDEFNLD RVFEREDLER YFQMIINELN
NSEDIKKLAQ LRSLSSNSVY IYNTYLNIPS ELPQRVKDLA VSITANETNN FDRAKAIEKY
LSANYGYTLT PGDTPPDRDF VDYFLFEQKE GYCVYFASAM VILARSIGLP ARYVEGFVLP
VRSKDGVYEV TNKQAHAWPE IYFEGFGWVS FEPTPVYQQN SFYSSGSFRP NMSGMLPQTN
GTGLQNQNND EGNKPDMAPQ PVQNQNPFIN ILLITAGILA GLVSFVLIIV GINKIRKKHW
LKSILNMSPK EAVIKLYETY LNHLLYQYMP VRPAETPLEY AKRLDDYGYF APRKFTDVAS
IFVKARYSQN EVTEADRASA LEFYKPIVLK TRSSMGRLKY FFLAHILGKI
|
|---|
| |