Gene Cthe_0927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_0927 
Symbol 
ID4811220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1112854 
End bp1116426 
Gene Length3573 bp 
Protein Length1190 aa 
Translation table11 
GC content41% 
IMG OID640106346 
Productcondensin subunit Smc 
Protein accessionYP_001037354 
Protein GI125973444 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.177469 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCATCTGA AGAGACTTGA AATTCAAGGC TTTAAATCCT TTGCCGACAG GATACAGCTT 
GAATTTAATT CCGGCATTAC TGCTGTGGTG GGACCGAACG GAAGCGGTAA AAGCAACATT
TCCGATGCGA TAAGGTGGGT ACTGGGAGAA CAAAGTGCCA AAACCTTAAG AGGCGGAAAG
ATGGAAGATG TAATATTTGC CGGTACCGAA CACAGAAAGC CCATGGGATT TGCGGAAGTT
TCCCTTACTT TTGACAATTC TGACGGCGTG CTTCCCATTG ATTTTAGTGA GGTTACGGTA
ACCAGGAGGG TGTATCGCTC CGGGGAAAGT GAGTATATGA TAAACAAAAC CCCGTGCCGT
CTTAAGGATA TATATGAGTT GTTCCTTGAT ACGGGAATTG GCAAAGACGG TTATTCCATA
ATCGGACAAG GAAGAGTTGA TGAAATCTTA AGCTCAAAGT CCGAAGACAG AAGGGCTATT
TTTGAAGAAG CCTCCGGGAT TATGAAGTAT AAGGTACGAA AGCAGGAAGC GGAAAAAAAG
CTTGAAATGA CAAGGCAGAA TCTGCTTAGA ATAAATGATA TTATTGCTGA GCTTGAAAAC
CAGCTGGAGC CTTTAAGAGA GCAGTCCGAG GTGGCAAAAA GGTACCTTGG CTTGAGAGAG
ACTCTAAAAG TACTGGAAGT AAATGTATAT ATAGAAAATA TCGCCAGATA CAAGGAAAAG
ATAAAGGAAT TGGAAGAAAA CTATGCGTCG GTAAAAGATA ACATAGACAG TGAAAATAAG
AGGCTGGAGG AAATTACAAG CCTCAATCAG ACGAACTTGA GCATTTTAAA AGATATGGAA
GGAAGGCTTG AAGCTGCAAA ACAAGAGTAT TATGCAATTG ACGGTAATCT TGAAAAATCC
AATTCCGAAA TCAGGCTAAA CCAGGAAAAA ATCAACAATC TGTTTTCAAA TATTGAACGC
CTTGACGGGG AAATAGCCGA GATTGATGAG AAAATCAAAA CTATTTTGGA GGAAGAAGCT
TCAAAGAATA GTAAAATCGT CTATCTTCAG GAGAGATACA ATGAGTATTC GGCAAAGCTT
GAAGAGGCTG AAAAAAAGCT TCAGGCCATT ATTGCCACAC TGAATGAGAA TGAGAGACAT
ATTGAAAACT TAAAGACAGA GATAATGGAA ATGCTTGACA TTCAGTCGGA CAAGAAGACG
CAGATCAACA ATATAAAAAA CCACATCGAA GGCATCAAAA AGAGACAGGC CAATATTGAC
AAAGAAGTAT ATCAGCTGAC TCTTGAAAAA GACAAGGAGT GCATGAAAAA AGAGGAGCTG
TCCGAGAGTA TCTACAAGAC AAACGAACTT ATAAAAAATA TAAAAGACTT GCTTCAGGAA
TTAACTGAAA AAAGAAAAGA CCTTGGTATA AAGCTCGAAG AGGAAAAGAA AAAGCAGAAT
AACGTCAGGT CTCAAATACA GATAATGACT TCGAGACAAA AGATGTTAAT AGACATGGAG
CGAAACCTGG AAGGCTATAA CCGGACTGTA AGGGTTATTT TACAGGCGTG CCGTGAGTCT
CATGAGTTTG GAAAGGGCAT TCATGGTGCG CTGGCTCAAC TGTTCACAGT GGACAAAAGG
TATGAGACAG CGATAGAAAT GGCGCTGGGT GGAGCTTTGC AGAATATTGT CACCACCAGT
GAGGAGGATG CCAAGAGGGT AATAGAATAT TTAAAGAAAA ACAATTTGGG AAGGGCAACT
TTTCTTCCCA TATCCTCTGT AAAAGGAAAA TATCTTGACG ACAGCATTTT AAACCAGTTA
AAAGATCATG AAGGCTTTGT CGGGGTTGCA TCCGACCTTA TTGAATATGA CGAGCAGTAC
AGGGGAATAA TTTTGAGCCT TCTGGGCAAG GTAGTGGTGG TAGAGAGCCT GGATGCCGGA
ATAAGGATGG CAAGAAAGTT TGGATACGGC TTTAGAATAG TATCCCTGGA CGGAGACATA
TTAAGCACCA CCGGTTCCAT ATCCGGAGGA AGCAAGGAAA AAAGAGAGTC GGGAATTTTG
AGCAGAAATC GGGAAATCTC CGAACTTGGG GAAAGCATTG CAAGGCTTAA GGAAGACGAT
GAAGCAATAG AAAAAAATGT TGAGGGATTA ATCAGAGAGC TTGAAGAGAT TACGGACAAA
ATATCCTTTG AGGAAAGAAG CCTTAAAGAC AATGAACTTG TAAAAATAAG AGACGAGAGC
CATTTGGCCC AGATTGAGGA AAATATCAAA AGAAGCCTTG CAAGAATTGA TATGCTAAAG
CAGGAGAAAG AGCAGCTCAT AAGACAGGAA AAGGATACTT GTCTGGAGCT TTCAAAATAC
GAAGATGAAC TGTCTGAAAT AGAAAGGGAT ATTGCAGAGA AAAAAGAGGT TGTGGCAAGG
TACCAGGAAA AGAACAAAGA AGAGCAGTCG GTAAGAGATG CATTGCACAA CGATATTACC
GACTACAGGA TTTCTGTAAA CTCCATTCTG GAGAGCATGG AAGGCGTAAA GGAAACATTG
GAGAGACTGG TAAATGAGAA AAACAGTCTT GTAAAGGCAA TGGAAAGAAA AAAAGCCGAG
AAAGCCAGAA ACGAGCAGGA GATTAAAGCT TTGCAGGAAA AAAATGAAGG TCTTGATAAA
CTAATTAAAA AGTATGAGGA GGAGAAATCT GGAAAGACTT TTGAAATAGA CAGGATTACG
GAGGAGAAAA AAATCCGGGA GGAAGAGTCT GCGGGTATTA TAGATCAGAT AACCGAAATA
AACAAAAATA TATTGCTGCT TCAGGAGGAA TACAGTAGAA TTGAGGTTAA GAAGGCAAAG
CTCGAGTCTG AGATGGAGTC TATTCAAAAC AGAATGTGGG ATGAGTATGA GTTGACTTAT
ACCAACGCAC TTGAGCTTAA AAAAGATATT GGAAGCATGG CGCAGGCGCA AAAAAGGATT
GCCGAAATAA GAAATGAGAT AAAGGAACTG GGGCCTGTCA ATGTGGCCGC CATTGACGAA
TATATAAAGA CAAAAGAGCG TTTTGAGTTT ATGTCGGCAC AGAAAAGCGA TATGGAACAG
GCTGAGAAAA AGCTTCAGAA AGTAATAAAT GAAATGATGA CCATAATGAA GCGCCAGTTT
ATGGAGAAAT TTAAACTTAT AAATGAAAAT TTTAACTTGG TGTTCAGAGA GTTGTTTGAC
GGCGGAAGGG CGGAATTGAT TCTGGTAGAC AAGGAGAATG TGCTTGAAAG CGGCATTGAG
ATAGAAGTAC AACCTCCGGG GAAGAAACTT CAGAATCTTA TGCTTCTTTC GGGAGGAGAA
AGAGCGTTTA CTGCAATTGC GCTGCTTTTT GCCATTCTAA GGCTTAATCC GACGCCCTTC
TGTGTGCTGG ATGAGATTGA AGCAGCTTTG GATGATGCAA ATGTGTACAA GTTTGCACAA
TATTTAAAGA AATATTCCAA TGTAACTCAG TTTGCGGTTA TTACTCACAG AAAGGGCACC
ATGGAAGCTG CCGATACGCT GTATGGTGTA ACAATGCAGG AGCATGGTGT TTCAAAAGTG
GTTTCCCTTA AAATGGGGGA AAAAGTGGGT TAA
 
Protein sequence
MHLKRLEIQG FKSFADRIQL EFNSGITAVV GPNGSGKSNI SDAIRWVLGE QSAKTLRGGK 
MEDVIFAGTE HRKPMGFAEV SLTFDNSDGV LPIDFSEVTV TRRVYRSGES EYMINKTPCR
LKDIYELFLD TGIGKDGYSI IGQGRVDEIL SSKSEDRRAI FEEASGIMKY KVRKQEAEKK
LEMTRQNLLR INDIIAELEN QLEPLREQSE VAKRYLGLRE TLKVLEVNVY IENIARYKEK
IKELEENYAS VKDNIDSENK RLEEITSLNQ TNLSILKDME GRLEAAKQEY YAIDGNLEKS
NSEIRLNQEK INNLFSNIER LDGEIAEIDE KIKTILEEEA SKNSKIVYLQ ERYNEYSAKL
EEAEKKLQAI IATLNENERH IENLKTEIME MLDIQSDKKT QINNIKNHIE GIKKRQANID
KEVYQLTLEK DKECMKKEEL SESIYKTNEL IKNIKDLLQE LTEKRKDLGI KLEEEKKKQN
NVRSQIQIMT SRQKMLIDME RNLEGYNRTV RVILQACRES HEFGKGIHGA LAQLFTVDKR
YETAIEMALG GALQNIVTTS EEDAKRVIEY LKKNNLGRAT FLPISSVKGK YLDDSILNQL
KDHEGFVGVA SDLIEYDEQY RGIILSLLGK VVVVESLDAG IRMARKFGYG FRIVSLDGDI
LSTTGSISGG SKEKRESGIL SRNREISELG ESIARLKEDD EAIEKNVEGL IRELEEITDK
ISFEERSLKD NELVKIRDES HLAQIEENIK RSLARIDMLK QEKEQLIRQE KDTCLELSKY
EDELSEIERD IAEKKEVVAR YQEKNKEEQS VRDALHNDIT DYRISVNSIL ESMEGVKETL
ERLVNEKNSL VKAMERKKAE KARNEQEIKA LQEKNEGLDK LIKKYEEEKS GKTFEIDRIT
EEKKIREEES AGIIDQITEI NKNILLLQEE YSRIEVKKAK LESEMESIQN RMWDEYELTY
TNALELKKDI GSMAQAQKRI AEIRNEIKEL GPVNVAAIDE YIKTKERFEF MSAQKSDMEQ
AEKKLQKVIN EMMTIMKRQF MEKFKLINEN FNLVFRELFD GGRAELILVD KENVLESGIE
IEVQPPGKKL QNLMLLSGGE RAFTAIALLF AILRLNPTPF CVLDEIEAAL DDANVYKFAQ
YLKKYSNVTQ FAVITHRKGT MEAADTLYGV TMQEHGVSKV VSLKMGEKVG