| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0680 |
|---|
| Symbol | |
|---|
| ID | 4810298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 836721 |
|---|
| End bp | 837374 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106097 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_001037108 |
|---|
| Protein GI | 125973198 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00731166 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAT GGGGAATTTT TATTAGCGCT TTTATTATAG GTTTTTCGGG AGCAATAATG
CCGGGGCCAA TGTTGGGAGT CACAATAGAC GGAAGCCTGA AAAAGAGCTG GATGGCGGGA
CCGTTGATAG TGCTGGGACA CGGAATACTG GAACTTTTGT TAATTGCCGT AATGACCTTT
GGTCTTAAAG ATTTCTTTTC CAATTTAACG GTTGCCGGAT TTATCGGATT ATTTGGCGGT
CTTTTTCTTG CCTGGATGGG CTATGGTATG ATAAAGTCCG CTGTAGGAAA ATCAGTCTCT
TTAAACGGCC AGAGAACAGG GAATAACTCA TATTTGAGAA ATCTTGTATT TACAGGCATA
TATGTGAGTG CAACCAATCC TTACTTTATT ATTTGGTGGG CTTCAACAGG AATGGAGTCA
ATACGCCGGG CTTATGAGAT AGGATTGCTT GGGGTTTTGT TTTTTTATGT CGGACATATT
TTATCGGATT TTGCATGGTA CACTTTGATA TCTGTAGCCG TTTCAAGAGG AAAGAAGCTT
GTAAGTGACG CTGTATACTC CAGGATTGTG CTGCTGCTGG GAATATTTAT TATAGCTTTT
TCATTCTATT TTATAGGCAG TGGATGTAAA ATGTTATTAA ACGGCGTGAT GTGA
|
|---|
| Protein sequence | MALWGIFISA FIIGFSGAIM PGPMLGVTID GSLKKSWMAG PLIVLGHGIL ELLLIAVMTF
GLKDFFSNLT VAGFIGLFGG LFLAWMGYGM IKSAVGKSVS LNGQRTGNNS YLRNLVFTGI
YVSATNPYFI IWWASTGMES IRRAYEIGLL GVLFFYVGHI LSDFAWYTLI SVAVSRGKKL
VSDAVYSRIV LLLGIFIIAF SFYFIGSGCK MLLNGVM
|
|---|
| |