Gene Cthe_0545 details

Gene Information

• Locus tag: Cthe_0545
• ID: 4808294
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 667183
• End bp: 667611
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640105959
• Product: prepilin peptidase CpaA
• Protein accession: YP_001036974
• Protein GI: 125973064
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4960] Flp pilus assembly protein, protease CpaA

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTATAG GAATTGTGAC CAATCTCGTA TTGGATGGAG TACGGGGACT TTTAGATTCT 
TTGCTTGGTA TTATTGTCCC CTTTTTATTG TTGATTGTAT TATACGCTTT AAGGATGCTG 
GGAGCCGGAG ATGTTAAGCT TTTTAGCGCA ATAGGAGCCG TTTTGGGGGT TAGAGCCGCG 
CTTTGGATAA TGGCCTATTC TTTTTTGGCG GGAGGTGTAA TTGCATTAAT TATCCTTATT 
ATCAATCGAA ACGGAAAAGA AAGATTGATG CATTTATTTA ATTATTTAAA GACTGTTTTT 
CTCACATTCA GCATACAGCC TTACACCAAT TTTGAAGATA AGGACGGAAA AGCCGTATTC 
AGAATGACAT ATGCGATAAC ATGCGGGGTT ATGGTGTTTT TTGTTGAAGT AATGCTTAAG 
ATGAAGTAG 

 

Protein sequence

MFIGIVTNLV LDGVRGLLDS LLGIIVPFLL LIVLYALRML GAGDVKLFSA IGAVLGVRAA 
LWIMAYSFLA GGVIALIILI INRNGKERLM HLFNYLKTVF LTFSIQPYTN FEDKDGKAVF 
RMTYAITCGV MVFFVEVMLK MK