| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0278 |
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| Symbol | |
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| ID | 4808561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 346371 |
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| End bp | 347066 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640105690 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001036710 |
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| Protein GI | 125972800 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCTT GCGGAAACAA CGGCATTGAT ATAATTTTTG AGGACAATCA TCTGCTGGTG
GTAAAAAAAC CGGTTAATAT TCCAACCCAG AAAGATAAGT CCAATGACAG CGACATGCTT
ACTCTTCTCA AAGAGGACAT AAAGAAAAGA TACAACAAGC CCGGAAATGT CTATCTCGGG
CTTGTTCACA GGCTTGATCG CCCGGTGGGG GGAGTAATGG TTTTTGCCAA AACCTCGAAA
GCCGCATCAA GACTTTCAGA CCAGGTACGC ACCAGACAAT TTAAAAAGGT ATATTTGGCA
GTTGTTCACG GAATTTTGGA CAAGCTTGAA GGAAGACTTG AGAATTATCT GTTAAAAGAC
ACCAGGAACA ATACGGTAAG CGTGGTCAAA GAAGACACGC CGGGAGGCAA GCTGGCGGTT
TTGGATTACA AGGTAGAGGG GATTTATAAC GGTTTCAGTT TGGTAAAAGT CAGTTTGCAC
ACAGGACGTC CTCACCAGAT CAGGGTCCAA CTGGCCAATA TAGGTCATCC GTTGTACGGC
GATCAGAAGT ACGGCCATGG CGTGAACAAA CCCGGACAGC AGATAGCTTT ATGGTCAAGT
GAAATTGCCT TTGTTCATCC CGTTTTAAAA CAGGAAATGA TTTTTTCATG TGAACCTCCT
GAAGTTGAAC CGTGGACTTG GTTTAACAGA GTATAG
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| Protein sequence | MSSCGNNGID IIFEDNHLLV VKKPVNIPTQ KDKSNDSDML TLLKEDIKKR YNKPGNVYLG
LVHRLDRPVG GVMVFAKTSK AASRLSDQVR TRQFKKVYLA VVHGILDKLE GRLENYLLKD
TRNNTVSVVK EDTPGGKLAV LDYKVEGIYN GFSLVKVSLH TGRPHQIRVQ LANIGHPLYG
DQKYGHGVNK PGQQIALWSS EIAFVHPVLK QEMIFSCEPP EVEPWTWFNR V
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