| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0536 |
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| Symbol | |
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| ID | 4787379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008826 |
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| Strand | + |
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| Start bp | 485151 |
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| End bp | 487130 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640092963 |
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| Product | CdaR family transcriptional regulator |
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| Protein accession | YP_001023541 |
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| Protein GI | 124263071 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3835] Sugar diacid utilization regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.289228 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00416894 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTGCCGG GTATCGGCAC CTTCGTGCCG GTGAAGCCGG GGATGGGCGT CCTGGCGGAT
TGCCAGCTCG TCGACGCAGA CCGCGCCCAG GTGCTGCGCT GTCTTGCGAT CGGCTTCGAA
CTCGCGCTCA CCGCAGCGAA CCAGTATCGC GTCACGAGGG ACGCGATGGA CGAGATCGAT
AGCCTGCAGC AGGTCGCCAG GCGCATTCTG TCCGCATCCG AACTGGACGA GGTGCTGTTC
TCGATCTCGC GCGAGACGGC CCGGCTCCTT GGCGCGGACA TCGGCGGGGT GTTTCTTCGA
GACGGCGACG AGCTCGTGAT GCGCAGTTGC GTCGGCAACG ACACGCTGGA CATCGATCGG
CTCAGGATGA AGCGTGGACA GGGCCTTGCA GGGCGCGTTC TAGAGACCGG GCGCCCGTGC
AAGGTCGACG ACTACCTCGC CAGCGATCAG GTCAGCCGCG ACTACTTCTG GCTCGTTCGC
GACGAGCAAA TCCGCTGCGC GGTGGGCGCG CCGCTGCTTG CGCGAGAAGG CGTGATCGGC
GTGCTCGAGG TTTGGCGCCG ACGCGACGTG CCGTTCACCG ATCAGGACGA GAAGCGCGTC
GCCGCGCTCG CCAATCTGAC GGCGATCGCG GTCCAGAATG CCCGGCTGTA CGAAAGCCAG
AAGGCTTCAG TGCAGCAGCT CATACAGACC AACGAGAGTC TGCGCCAGCA GCACGAGGTC
GTGCGTGTGT CGGCACAACT CCAGGACGAC GTCATCGGCG CCCTACTGGA CGGCGGCGGC
GTCACGGCGA TCGCGCGGAT CGTCGCCCGC CATGCCGGTG TGGAGGTCGC GATCCTGGGG
ACCGATCTCG GGGTAATGGC TGCCTATCCG GCGCAGGTCT CGAACGGCGA CTGGCTCGAG
CGGGTGGAGA CCGCCGTGCG GCAGTTCCCC GGGTACGCCA ACAACACCAG CGTGACCTCC
CGAGAGCGCG ATGGCTGGCT CTCGCTGCGT CCGATCGTTG CTGGCGGGGA CCGGATTGGC
TGGGTATGCA TGCGCTCGAA CAGTGAGCCG GCCGAGATGC AAGAAGCCGC GAGCCGTCAA
GGAGCGGTCG CTAGCGCGCT GTATTGCCTT GAGCAGCGTG CTGCAAGCGT CGCCCGGGCC
TCCGCGCTCG GCGCGCTGAT GTGGGACTTG CTGGAGGGCA CGCCGCCGGT CAGGCAATCC
GCGCTCGAGC GCTTGACGGA GTTCCACATC GACCTGCGGG GCCCGCACCG CGTCGTCCAT
TGCACTATAG AGGGCCTGGC CGAGACGGCG CGCGGCGAGG GTTGGAACAT GGACACGGTG
CAGCGCAAGC AGCGCGACGT GCGAGATGCG ATCGAGCGAG CGCTGAGCGC TGCGGGACTG
AAGTTGGCGT CCTCCCGTGG CGATCTGATC GTGGCGATCA TCCCAGCGCT GGACGCCGCG
CAGGTGACGC GGCAGCTCAA GTCGCTGAAC GAGGAGATCC TGGCGAGGGA CAAGGTCAGA
ACGTTCTGGG GCGTCAGCGC TCCATTCGAT TCGCCGTCGC AGCTGTCGAA CGCCAACCAG
GAGGCCAAGT GTGCCGCGCT GGCCGTTGGG AAGCTGGGCA CGGCGCAGAG CCCGGTGGTA
ATTCACGAGC ATCTGGGCGT GCTGACGTTG TTATTGAATG GTGGCGGTAT TGCCGAGGGG
CACGACCTTC GCAAGTACGT CGACCGCATG CTGGGCCCGA TGCTCAAGTA CGACTCCGCG
CACCATGGCG TCCTGGCGAA GACGATCCGG TCCTATCTGG ACAACGATTG TTCACTGAAG
CTGACGGCGC TGCAGCTTTT CGTCCACGAG AAGACCGTCC GCTACCGTCT CGCCCAGTTC
GAGGAGCTGA CGGGCGTCGA CTTGCGCCGC CACCGCGAAC GGATGTCGGT CGACCTAGCG
TTGCTGATGC ACGACTTCGC GACCCGGTCG GCCGGCGTAG CAGGCAAAGG GGCGGGCTGA
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| Protein sequence | MLPGIGTFVP VKPGMGVLAD CQLVDADRAQ VLRCLAIGFE LALTAANQYR VTRDAMDEID
SLQQVARRIL SASELDEVLF SISRETARLL GADIGGVFLR DGDELVMRSC VGNDTLDIDR
LRMKRGQGLA GRVLETGRPC KVDDYLASDQ VSRDYFWLVR DEQIRCAVGA PLLAREGVIG
VLEVWRRRDV PFTDQDEKRV AALANLTAIA VQNARLYESQ KASVQQLIQT NESLRQQHEV
VRVSAQLQDD VIGALLDGGG VTAIARIVAR HAGVEVAILG TDLGVMAAYP AQVSNGDWLE
RVETAVRQFP GYANNTSVTS RERDGWLSLR PIVAGGDRIG WVCMRSNSEP AEMQEAASRQ
GAVASALYCL EQRAASVARA SALGALMWDL LEGTPPVRQS ALERLTEFHI DLRGPHRVVH
CTIEGLAETA RGEGWNMDTV QRKQRDVRDA IERALSAAGL KLASSRGDLI VAIIPALDAA
QVTRQLKSLN EEILARDKVR TFWGVSAPFD SPSQLSNANQ EAKCAALAVG KLGTAQSPVV
IHEHLGVLTL LLNGGGIAEG HDLRKYVDRM LGPMLKYDSA HHGVLAKTIR SYLDNDCSLK
LTALQLFVHE KTVRYRLAQF EELTGVDLRR HRERMSVDLA LLMHDFATRS AGVAGKGAG
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