| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2987 |
|---|
| Symbol | |
|---|
| ID | 4783591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 3174282 |
|---|
| End bp | 3175238 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640091558 |
|---|
| Product | putative site specific integrase |
|---|
| Protein accession | YP_001022175 |
|---|
| Protein GI | 124268171 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCAC CGTCCCAGCT CGAACTCCTG CCCGCCGCGT CCGTGCCGGC GCTGCTCGCG
CCTGACGCCC GCGCCAAGGC GCGCACGCTG GAGTTCTTCA CCGCGCACAT CCGCAACCCG
AACACCCGCA AGGCTTACGC GCGGGCCGGG CAGCACTTCG CCGACTGGTG CGCGCGCTTC
GGCATCGGCG ACGTGCGGCA GGTGCAGCCG GTCCACGTCG CGCTGTACGT CGAGCAGCTC
GACCTGGCCG CACCCTCGGT GAAGCAGCGC CTGGCGGCGC TGCGCGCGCT GTTCGACTGG
CTGGTGGTGG GGCAGGTGAT GCCGATCAAC CCGGCGGCGG CCGTGCGCGG GCCGCGCTAC
TCGGTGAAGA CCGGTAAGAC GCCCGTGCTG TCGGCGAGCG AGGTGCGCGA CCTGGTCGAG
TCCATCGACG CCGAATCCCT GGTGGGCATG CGCGATCGGG CCTTGATCGG GACCATGGTC
TACACCTTCG CGCGCGTCGG CGCGGTGACG CGGCTGCGGG TCGAGGATGT CTACACGCAG
CGGCGGCGCC TGTGGGTGCG GCTGGACGAG AAGGGCGGCA AGCGCCACGA GATGCCGTGC
CACCACCGGC TGGAGGAGTG GCTCTACGAC TACCTGGAGG CCGCCGGCAT TGCCGACGAT
CCCGGCGGGC CGCTGTTCAG GTCGGCGCGC GCTGCCACCG ACACGCTGAC GTCGCGGCCG
ATGTCCCAGG CCGACGTGTA CCGGATGATC CGGCGGCGCG CGGAAGCTGC CGGCATTGCC
ACGGCCATTG GATGTCACTC GTTCCGCGCG ACTGGCATCA CCGAGTACCT CTTGAACGGC
GGCAAGCTGG AGATCGCGCA GCAGATGGCC AATCACGAGT CTTCACGCAC GACGGGCCTG
TACGACCGGC GCGGCGACCA GATCAAGCTC AACGAGGTGG AGCGGATCGG CATTTGA
|
|---|
| Protein sequence | MFAPSQLELL PAASVPALLA PDARAKARTL EFFTAHIRNP NTRKAYARAG QHFADWCARF
GIGDVRQVQP VHVALYVEQL DLAAPSVKQR LAALRALFDW LVVGQVMPIN PAAAVRGPRY
SVKTGKTPVL SASEVRDLVE SIDAESLVGM RDRALIGTMV YTFARVGAVT RLRVEDVYTQ
RRRLWVRLDE KGGKRHEMPC HHRLEEWLYD YLEAAGIADD PGGPLFRSAR AATDTLTSRP
MSQADVYRMI RRRAEAAGIA TAIGCHSFRA TGITEYLLNG GKLEIAQQMA NHESSRTTGL
YDRRGDQIKL NEVERIGI
|
|---|
| |