Gene Mpe_A2940 details

Gene Information

• Locus tag: Mpe_A2940
• Symbol: fimU
• ID: 4784362
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylibium petroleiphilum PM1
• Kingdom: Bacteria
• Replicon accession: NC_008825
• Strand: +
• Start bp: 3125015
• End bp: 3125545
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 640091511
• Product: fimbrial biogenesis protein
• Protein accession: YP_001022128
• Protein GI: 124268124
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.637065
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGAACGC CGCAACGGGG ATTCACCTTC ATCGAGACGG GCGCCACGCT CGCCATCCTG 
GCGATCGCTG CAACCCTCGC GATCCCTGGC TTCCAGGATC TGCTGCAGCG AAGGCACACG 
GAAGGCGTGG CCACCGAGCT CGCCACCGAC CTGCAGTTCC TGCGCTCCGA AGCGGTCGCC 
CGCAATCAGA CGCTGCGCGC CAGCTTCTCC GCGTTGCCCG GCGGTGGCAG CTGCTACCTG 
CTGCACTCGG GTGCCGCGGC GGCCTGCCGT TGCCAGCCCG ACGGCAGTCC GTCCTGCAGC 
GGCGACGCGC AGCAGATCAA GGCGGTGCCC CTGCCGGCCG GTAGCCGCGT CAGCGTGCAG 
GCCAACGTGG GCTCCATCGT CTACGACCCG CGGCACGGCA CCAGCACGCC GGCCGCGACG 
ATCCGCGTCA CGGGTCTGGA CGGCCGCGCG GTGCACCACG TGGTGAACAT CATGGGCCGA 
GTTCGCTCGT GCTCCCCTCG TGCCGAGTTC GGCGGCTACC ACGCCTGCTG A 

 

Protein sequence

MRTPQRGFTF IETGATLAIL AIAATLAIPG FQDLLQRRHT EGVATELATD LQFLRSEAVA 
RNQTLRASFS ALPGGGSCYL LHSGAAAACR CQPDGSPSCS GDAQQIKAVP LPAGSRVSVQ 
ANVGSIVYDP RHGTSTPAAT IRVTGLDGRA VHHVVNIMGR VRSCSPRAEF GGYHAC