| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_27351 |
|---|
| Symbol | menF |
|---|
| ID | 4778303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | + |
|---|
| Start bp | 2409330 |
|---|
| End bp | 2410847 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640088258 |
|---|
| Product | isochorismate synthase |
|---|
| Protein accession | YP_001018730 |
|---|
| Protein GI | 124024423 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.705522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACATC CTGCTGGTCT GGCATGGGAA AGAAGCCTGG AAACCAGGGA AAGGCCCATA
CATTTGAGCA GCACCCGCGC TCAACTCCGA TCCCGGATGA CAGCTGACCG TAGTTTCAGC
AATCTTTTAA CTGCCGCATC CCGGGGCTGG TGCGAACGCA AGGGCGATGA AGGTGTCCTC
AGCCTGGCCC TGCCTCTCGA CGAGGTGGAT CCCCTGTACC ACCTGCCCTT ACTAGCCGAT
GAGCATCCCT TCCAGTTTCT CTGGGATAGT GCACCAGGCC TTTGCTTTGC AGCAGCAGGT
CAGTGCCAAA GCCTTGATCT TGCAGGCCCC AGACGCTTTG AGCTAGCCCA ACGATTCAGC
GATACAACCC TGGCACGCCT CACAGACGCG ACGCCCAACG CCCCTACCCA GGCTCGAGCC
AAAATCCTGC TGGCCTTTTC CTTTTTCGAC CATCCCGCAG AACGGCAACG CAGCCAGATC
CACACCAGTG CAGTTCAAGC GGTACTGCCG CGCTGGCAAC TCAGCCGCCA GGGTCGACAC
GGTTGGCTGC GTCTCAATGG CGTGATCACC CAGCAAGCAG AAGCGCGGGA CCTAGCAGAA
CAGCTTTGGC TGATGGCGGA AAACCTGCTC GACCCCAATC ACAATTCAAA AGATTTCTGG
CCCAGCAGCG TCCGCGGCAC CACGGAACTC CAGCCCTGGC AGGAGTGTTA CAGACCAGCT
CTCAAACGCG GACTGGATTT AGTAAGCAGC GGTGAGCTCA ACAAATTGGT GCTGGCTGTG
CGCCAATCCA TTCAGCTCCA AGCACCCTTA AACCCGCTGC CAGTACTGGC GAAGCTACGT
CAACAACAAT CAGGTAGCTG CCGCTTCTTA TGGCGAAGAA GCCACGAGGA TGCCTTCTTT
GGAGCTTCGC CTGAACGGCT ACTCAGCCTG CAAGGGAATC AGCTACGCAC CGACGCTCTC
GCCGGCACTG CTGATCGGAA TGACGATGGA CAGGGCCTAC TCCGCTCGGA AAAGGACCGT
CGCGAGCATG AACTTGTCGT TGCCTCCATT ACCAGTCAAC TGTTCAATCA AGGACTGACA
CCACGGCGAC CACGGAACCC CCAGCTCGCT CGTCATGGCC AACTGGTGCA TCTGCATACA
CCGATTACAG CCAATGCCAT GGGTCACACA TCCCTCAATC TGGCCAAAAT TCTTCATCCA
ACACCGGCTG TAGCGGGTCT GCCTTGCCGG GAGGCGATGG CCTGGCTGCG CACATTGGAA
CCTTTTGAAC GTGGCAGCTA TGCGGCGCCG ATTGGCTGGA TCGACAGCCA AGGCGATACG
GAACTGCGCG TGGCCATCCG TTGTGGCCAC GCCAGAGGTT CAGTGCTTGA TCTCACCGCT
GGAGCTGGTT TGGTCCGAGG CTCTGTGGTC GAACGCGAAT TACAAGAAGT TGGCATGAAG
CTGTCTGTAC TGGCCGACCA ACTCGATCTG GATGCCAAGG ATCAACCAAG ACTGACCAGC
AAACGCGCAA TCACTTGA
|
|---|
| Protein sequence | MQHPAGLAWE RSLETRERPI HLSSTRAQLR SRMTADRSFS NLLTAASRGW CERKGDEGVL
SLALPLDEVD PLYHLPLLAD EHPFQFLWDS APGLCFAAAG QCQSLDLAGP RRFELAQRFS
DTTLARLTDA TPNAPTQARA KILLAFSFFD HPAERQRSQI HTSAVQAVLP RWQLSRQGRH
GWLRLNGVIT QQAEARDLAE QLWLMAENLL DPNHNSKDFW PSSVRGTTEL QPWQECYRPA
LKRGLDLVSS GELNKLVLAV RQSIQLQAPL NPLPVLAKLR QQQSGSCRFL WRRSHEDAFF
GASPERLLSL QGNQLRTDAL AGTADRNDDG QGLLRSEKDR REHELVVASI TSQLFNQGLT
PRRPRNPQLA RHGQLVHLHT PITANAMGHT SLNLAKILHP TPAVAGLPCR EAMAWLRTLE
PFERGSYAAP IGWIDSQGDT ELRVAIRCGH ARGSVLDLTA GAGLVRGSVV ERELQEVGMK
LSVLADQLDL DAKDQPRLTS KRAIT
|
|---|
| |